Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0499.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                   113   6e-26
SB_39420| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09)                 28   4.9  

>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score =  113 bits (273), Expect = 6e-26
 Identities = 52/70 (74%), Positives = 57/70 (81%)
 Frame = +3

Query: 255 GKLRYANNSNYKNDTMIRKEAYVHPCVMDELKRIIIDSEIMHEXXRLWPQPDRVGWXELE 434
           GKLRYANNSNYKNDTMIRKE Y H  V++ELKRII DSE+M E   LWPQPDRVG  ELE
Sbjct: 32  GKLRYANNSNYKNDTMIRKEVYCHKAVIEELKRIIDDSEVMKEDDALWPQPDRVGRQELE 91

Query: 435 IVIGEEHIXF 464
           IV G++HI F
Sbjct: 92  IVYGDQHISF 101



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = +1

Query: 178 DFYIRYYVGHXGKFGHEFLEFEFRPEG 258
           DFY+RYYVGH GKFGHEFLEFEFRP+G
Sbjct: 6   DFYLRYYVGHKGKFGHEFLEFEFRPDG 32


>SB_39420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 993

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 270 ANNSNYKNDTMIRKEAYVHPCVMDELKRIIIDS 368
           A  ++ +N T ++   Y+HP   D+LKRI++ S
Sbjct: 2   ALRNSSQNVTQLQNATYIHPRGTDDLKRIVLIS 34


>SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09)
          Length = 836

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 112 ISRAAKVEVLEDKXKTLCKMSTDFYIRY---YVGHXGKFGHEFLEFEFRPEGN 261
           I+ + K+  +    +T  +   D   +Y   YVG  G  G E+L  EFR E N
Sbjct: 109 IAASEKIFHVNPSERTSVEAIADLVSKYQWAYVGLIGDTGSEYLVSEFRSEAN 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,402
Number of Sequences: 59808
Number of extensions: 247418
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)