Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0499.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical pr...    98   3e-21
AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.    97   8e-21
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p...    30   1.1  
U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine rece...    29   1.9  
Z81109-11|CAB03254.2|  318|Caenorhabditis elegans Hypothetical p...    28   3.3  
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    28   4.3  
U40028-1|AAA81114.2|  392|Caenorhabditis elegans Fucosyl transfe...    27   7.6  
AJ745074-1|CAG32980.1|  392|Caenorhabditis elegans alpha1,3-fuco...    27   7.6  
AF043701-5|ABP57822.1|  166|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical
           protein R09B3.5 protein.
          Length = 152

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 47/70 (67%), Positives = 52/70 (74%)
 Frame = +3

Query: 255 GKLRYANNSNYKNDTMIRKEAYVHPCVMDELKRIIIDSEIMHEXXRLWPQPDRVGWXELE 434
           G LRYANNSNYKNDTMIRKEA V   V+ ELKRII DSEIM E    WP+PD++G  ELE
Sbjct: 36  GSLRYANNSNYKNDTMIRKEATVSESVLSELKRIIEDSEIMQEDDDNWPEPDKIGRQELE 95

Query: 435 IVIGEEHIXF 464
           I+   EHI F
Sbjct: 96  ILYKNEHISF 105



 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +1

Query: 172 STDFYIRYYVGHXGKFGHEFLEFEFRPEGN 261
           + DFY+RYYVGH GKFGHEFLEFEFRP G+
Sbjct: 8   AADFYVRYYVGHKGKFGHEFLEFEFRPNGS 37


>AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.
          Length = 147

 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 46/70 (65%), Positives = 51/70 (72%)
 Frame = +3

Query: 255 GKLRYANNSNYKNDTMIRKEAYVHPCVMDELKRIIIDSEIMHEXXRLWPQPDRVGWXELE 434
           G LRY NNSNYKNDTMIRKEA V   V+ ELKRII DSEIM E    WP+PD++G  ELE
Sbjct: 31  GSLRYGNNSNYKNDTMIRKEATVSESVLSELKRIIEDSEIMQEDDDNWPEPDKIGRQELE 90

Query: 435 IVIGEEHIXF 464
           I+   EHI F
Sbjct: 91  ILYKNEHISF 100



 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +1

Query: 172 STDFYIRYYVGHXGKFGHEFLEFEFRPEGN 261
           + DFY+RYYVGH GKFGHEFLEFEFRP G+
Sbjct: 3   AADFYVRYYVGHKGKFGHEFLEFEFRPNGS 32


>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 27  NLKFNSEINLTDNLRLRVFSSLSNFLLVYQ 116
           N KF+ EI LTDN     FS  S  LL+Y+
Sbjct: 755 NKKFDEEIKLTDNNDFVQFSMRSESLLIYR 784


>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 27  NLKFNSEINLTDNLRLRVFSSLSNFLLVYQ 116
           N KF+ EI LTDN     FS  S  LL+Y+
Sbjct: 755 NKKFDEEIKLTDNNDFVQFSMRSESLLIYR 784


>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 27  NLKFNSEINLTDNLRLRVFSSLSNFLLVYQ 116
           N KF+ EI LTDN     FS  S  LL+Y+
Sbjct: 755 NKKFDEEIKLTDNNDFVQFSMRSESLLIYR 784


>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 27  NLKFNSEINLTDNLRLRVFSSLSNFLLVYQ 116
           N KF+ EI LTDN     FS  S  LL+Y+
Sbjct: 755 NKKFDEEIKLTDNNDFVQFSMRSESLLIYR 784


>U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein39 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 305 YHCIVFIVRI-IGITQFPSGRNSNS-RNSWPNFPXCP 201
           YHCI+F++   + I+ F    + NS +NS+ N+  CP
Sbjct: 139 YHCIMFVISFSLLISSFLRLEDQNSAKNSYVNYFLCP 175


>Z81109-11|CAB03254.2|  318|Caenorhabditis elegans Hypothetical
           protein R10D12.11 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = -2

Query: 348 LTRPLHKGEHRLLYVSLYRFYS*NYWHNAVSLRPEFKFEKFVAKLSXVSNIISYVKIRRH 169
           +T P ++ E ++     Y+FY   ++   V L  E  F  FV      S +I YV I   
Sbjct: 150 ITEPRNQIEAKMRVAEKYQFYPDFFFDPKVYLLQETPFFVFVPG----SVVIFYVFIELS 205

Query: 168 FAQSFXFILENFHFSGSTDT-LKENYSMMRK 79
           F     +IL++FH    T++ + E   M++K
Sbjct: 206 F-----YILQSFHQLNKTNSHMSERTKMLQK 231


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 393 LWPQPDRVGWXELEIVIGEEH 455
           L+PQP  V +  LE +IGEEH
Sbjct: 285 LFPQPGFVQFENLEHIIGEEH 305


>U40028-1|AAA81114.2|  392|Caenorhabditis elegans Fucosyl
           transferase protein 6 protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = -2

Query: 234 EKFVAKLSXVSNIISYVKIRRHFAQSFXFILENFHFSGSTDTLKENYSMMRKPSNANYQL 55
           E+F+A    V N     +    F  +   +  N  + GSTD  K+  S  RKP    Y L
Sbjct: 82  ERFLATCPDVQNYCRITQEESEFDNADAVLFHNADYRGSTDKFKKMKS-QRKP-GVPYVL 139

Query: 54  N*FQN*TSDYTR 19
              ++ T+D  R
Sbjct: 140 WSLESPTNDMFR 151


>AJ745074-1|CAG32980.1|  392|Caenorhabditis elegans
           alpha1,3-fucosyltransferase protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = -2

Query: 234 EKFVAKLSXVSNIISYVKIRRHFAQSFXFILENFHFSGSTDTLKENYSMMRKPSNANYQL 55
           E+F+A    V N     +    F  +   +  N  + GSTD  K+  S  RKP    Y L
Sbjct: 82  ERFLATCPDVQNYCRITQEESEFDNADAVLFHNADYRGSTDKFKKMKS-QRKP-GVPYVL 139

Query: 54  N*FQN*TSDYTR 19
              ++ T+D  R
Sbjct: 140 WSLESPTNDMFR 151


>AF043701-5|ABP57822.1|  166|Caenorhabditis elegans Hypothetical
           protein K12C11.7 protein.
          Length = 166

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 174 RHFAQSFXFILENF 133
           RHFA SF F L+NF
Sbjct: 105 RHFASSFLFFLQNF 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,096,116
Number of Sequences: 27780
Number of extensions: 190134
Number of successful extensions: 418
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)