Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0497.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    72   6e-14
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    31   0.13 
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    30   0.17 
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    30   0.17 
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    29   0.39 
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.68 
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    28   0.68 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   1.6  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    25   4.8  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   6.3  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   6.3  

>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 71.7 bits (168), Expect = 6e-14
 Identities = 42/119 (35%), Positives = 63/119 (52%)
 Frame = +2

Query: 104 REKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKALQSVGX*LXKS*NSS 283
           R+ A + Y+  L++ +E +S+LK+ R   +DL K+YD +E+D+K+LQSVG  + +     
Sbjct: 4   RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQL 63

Query: 284 QXXXXXXXXXXXXXXXXXVVGNLTKXCLKEEHXFALDMXXLTIMXXLXXEVDPLVYNMS 460
                                N+ +  L +    +LDM  LTIM  L  EVDPLVYNMS
Sbjct: 64  DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMS 122



 Score = 59.3 bits (137), Expect = 3e-10
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = +1

Query: 256 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
           I+GEVLKQL  E+FIVKA++GPRYVVGCR  +D+  L  G  V
Sbjct: 55  IIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRV 97


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 107 EKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDL 232
           +K  +D RKKL E +E ES L+  R+ L+        S NDL
Sbjct: 571 DKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDL 612


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 256 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
           ++G+ L+ + +   IV +T G  YVV     LD+ +LK    V
Sbjct: 57  VIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASV 99


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 80  STSDMEPLREKAFQDYRK-KLMEXKEVESRLKEGRDXLKDLT 202
           S + +E  ++K F+ Y+K +  E K+ E R+K+    LKD T
Sbjct: 48  SMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDET 89


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 89  DMEPLREKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYD 214
           +++PL  +AFQD  K L +   V S+L    + + D  K+ D
Sbjct: 544 ELKPLLNEAFQDIEKTLQKLMPVASKLNPLEEVMYDDPKEND 585


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 98  PLREKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKALQS 247
           PL       YRK L   K+V+  L E  + LK L K+    +ND + L++
Sbjct: 184 PLYPNGQPKYRKILENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLEN 233


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 271 LKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
           L+++ ++   + +T GP Y V     +DK ML+ G  V
Sbjct: 119 LEEIIDDDHAIVSTAGPEYYVSIMSFVDKDMLEPGCSV 156


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 342 TTANNVARAISSFYNK--FFFCELFQDFXNYXPTLCRAFRSF 223
           T A  +A+ I +FY K  +  C L++   NY   + RAF  F
Sbjct: 866 TAAQFMAQQIFAFYFKVDYAICSLYRRSENYLIPVVRAFTEF 907


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 259 VGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLK 369
           VGEV+K + + K +VK     +YVV     +D   +K
Sbjct: 69  VGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIK 105


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 128 RKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKA 238
           R +L++     +  KE  D LK    +YD  EN+LKA
Sbjct: 396 RNQLLQINRNINSTKENSDYLKT---EYDEMENELKA 429


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 86  SDMEPLREKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLK 235
           S  E +RE+  Q   KKL + + ++SRL + R  ++     Y  S + LK
Sbjct: 404 SSCETIREEN-QKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLK 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,417
Number of Sequences: 5004
Number of extensions: 24685
Number of successful extensions: 69
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)