Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0497.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003...    73   2e-13
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559...    70   9e-13
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835...    29   2.7  
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335...    29   2.7  
06_01_0767 + 5732573-5732670,5733223-5733278,5733928-5734007,573...    27   6.3  

>06_03_0711 +
           23798998-23799106,23799838-23799957,23800181-23800317,
           23800418-23800579,23800707-23800793,23800872-23800958,
           23801317-23801454,23802023-23802214,23802287-23802385,
           23802490-23802564
          Length = 401

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 44/120 (36%), Positives = 58/120 (48%)
 Frame = +2

Query: 104 REKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKALQSVGX*LXKS*NSS 283
           R  A  DYRKKL+  +E+E+R +  RD LK+  K +  +E+DLK+LQSVG  + +     
Sbjct: 13  RRAAATDYRKKLLTCRELEARARTARDNLKNAKKDFGKTEDDLKSLQSVGQIIGEVLRPL 72

Query: 284 QXXXXXXXXXXXXXXXXXVVGNLTKXCLKEEHXFALDMXXLTIMXXLXXEVDPLVYNMSH 463
                                 + K  L       LDM  LTIM  L  EVDP+VYNM H
Sbjct: 73  DSERFIVKASSGPRYVVGCRSKVDKEKLIAGTRVVLDMTTLTIMRTLPREVDPVVYNMLH 132



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = +1

Query: 256 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
           I+GEVL+ L  E+FIVKA++GPRYVVGCR  +DK  L  GT V
Sbjct: 64  IIGEVLRPLDSERFIVKASSGPRYVVGCRSKVDKEKLIAGTRV 106


>02_01_0754 -
           5595813-5595887,5595973-5596071,5596136-5596327,
           5596992-5597129,5597415-5597501,5597583-5597669,
           5597795-5597956,5598089-5598225,5598483-5598602,
           5600668-5600773
          Length = 400

 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 42/120 (35%), Positives = 58/120 (48%)
 Frame = +2

Query: 104 REKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKALQSVGX*LXKS*NSS 283
           R  +  +YRKKL+  +E+ESR+   R+ LK+  K +  +E+DLK+LQSVG  + +     
Sbjct: 12  RRASVTEYRKKLLNCRELESRVSTVRENLKNAKKDFTKTEDDLKSLQSVGQIIGEVLRPL 71

Query: 284 QXXXXXXXXXXXXXXXXXVVGNLTKXCLKEEHXFALDMXXLTIMXXLXXEVDPLVYNMSH 463
                                 + K  L       LDM  LTIM  L  EVDP+VYNM H
Sbjct: 72  DNERFIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRTLPREVDPVVYNMLH 131



 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = +1

Query: 256 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
           I+GEVL+ L  E+FIVKA++GPRYVVGCR  +DK  L  GT V
Sbjct: 63  IIGEVLRPLDNERFIVKASSGPRYVVGCRSKVDKEKLTSGTRV 105


>07_03_1770 -
           29382508-29382591,29382901-29383041,29383134-29383520,
           29383685-29383930,29385396-29385437,29385973-29386461
          Length = 462

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 259 VGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
           VG + + + E   IV ++ GP Y VG    +DK  L+ G  +
Sbjct: 117 VGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSI 158


>03_02_0691 +
           10432615-10433109,10433155-10433216,10433526-10433565,
           10434562-10434807,10435020-10435189,10435323-10435539,
           10435615-10435755,10435943-10436026
          Length = 484

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 259 VGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
           VG + + + E   IV ++ GP Y VG    +DK  L+ G  +
Sbjct: 119 VGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCAI 160


>06_01_0767 +
           5732573-5732670,5733223-5733278,5733928-5734007,
           5735334-5735372,5735563-5735950,5736049-5737562
          Length = 724

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 309 SFYNKFFFCELFQDFXNYXPTLCRAFRSFSLXSYCLVKSFSXSRPSL 169
           +F++KFFFC+  Q      P L     S+ +    LV  F     SL
Sbjct: 434 TFHDKFFFCDDDQSVLRNVPWLVMRTDSYIVPGLFLVTGFQAELDSL 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,159,751
Number of Sequences: 37544
Number of extensions: 153180
Number of successful extensions: 281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)