Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0497.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)               101   3e-22
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)             29   1.6  
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)                    28   3.7  
SB_33442| Best HMM Match : AAA (HMM E-Value=0)                         28   3.7  
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)                 28   4.9  
SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_16347| Best HMM Match : LRR_1 (HMM E-Value=0.37)                    28   4.9  
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033)                28   4.9  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        27   6.5  
SB_22253| Best HMM Match : Pkinase (HMM E-Value=0)                     27   8.6  
SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3)                     27   8.6  

>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score =  101 bits (242), Expect = 3e-22
 Identities = 57/120 (47%), Positives = 70/120 (58%)
 Frame = +2

Query: 104 REKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKALQSVGX*LXKS*NSS 283
           REKA  +Y+KKL+E +E+++RLKE R+ LKD TK+YD SENDLKALQSVG  + +     
Sbjct: 7   REKALLEYKKKLLEHRELDARLKEMREQLKDFTKEYDKSENDLKALQSVGQIVGEVLKQL 66

Query: 284 QXXXXXXXXXXXXXXXXXVVGNLTKXCLKEEHXFALDMXXLTIMXXLXXEVDPLVYNMSH 463
                                 + K  LK+    ALDM  LTIM  L  EVDPLVYNMSH
Sbjct: 67  TEEKFIVKATNGPRYVVGCRRQVDKAKLKQGTRVALDMTTLTIMRYLPREVDPLVYNMSH 126



 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 37/43 (86%), Positives = 38/43 (88%)
 Frame = +1

Query: 256 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
           IVGEVLKQLTEEKFIVKATNGPRYVVGCRR +DK  LK GT V
Sbjct: 58  IVGEVLKQLTEEKFIVKATNGPRYVVGCRRQVDKAKLKQGTRV 100


>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
          Length = 1102

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 41  SLK*QFKLFTMPASTSDMEPLREKAFQDYRKKLM-EXKEVESRLKEGRDXLKDLTKQYDX 217
           +LK   +L  +  S  +     E A QD + +L  +  ++E R+  G   +K+LTK+   
Sbjct: 537 TLKENAQLLVVLDSREERIRALEGAQQDKKAELSTDISKLEYRVNIGNSRIKELTKRNKE 596

Query: 218 SENDLKALQ 244
           S +D+K ++
Sbjct: 597 SSSDIKGIK 605


>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1888

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 95   EPLREKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSEND 229
            EP+ E+  Q Y +     +E+ ++LKE R  +  L   YD  + D
Sbjct: 1022 EPINERDTQIYFELASTHEELSNQLKESRPDVGGLVIVYDGDKTD 1066


>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
          Length = 369

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 256 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
           ++G+ L+ + +   IV +T G  Y V     +DK +LK    V
Sbjct: 87  VIGQFLEAVDQNTGIVASTTGSNYYVRILSTIDKELLKPSASV 129


>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 89  DMEPLREKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKALQSVGX*LXK 268
           ++E L+EK+    R+   + KE+E  L E +  L DL+K  +      K L+ +   L K
Sbjct: 145 NVEELKEKSTLLEREVNQQNKEIERILSENKVTLADLSKTQENLMKKAKELEDLQQKLLK 204


>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
          Length = 961

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 497 YDGIGHITRILYDSCCKL 444
           YDG+  I R+L  SCC+L
Sbjct: 797 YDGVKAIARLLVKSCCRL 814


>SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/59 (25%), Positives = 33/59 (55%)
 Frame = +2

Query: 68  TMPASTSDMEPLREKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKALQ 244
           T+  + +D+E  R+ +   +RK++ E  + +S L+  +   K+  K+    E+D+K L+
Sbjct: 367 TLQQTANDLEAQRKASEYSFRKRIHETDQAKSELEWQQ---KNTMKEIATLEDDIKGLK 422


>SB_16347| Best HMM Match : LRR_1 (HMM E-Value=0.37)
          Length = 320

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 497 YDGIGHITRILYDSCCKL 444
           YDG+  I R+L  SCC+L
Sbjct: 148 YDGVKAIARLLVKSCCRL 165


>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 497 YDGIGHITRILYDSCCKL 444
           YDG+  I R+L  SCC+L
Sbjct: 883 YDGVKAIARLLVKSCCRL 900


>SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033)
          Length = 431

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 247 CWTIVGEVLKQLTEEKFIVKATNGPRYV 330
           CW+    V K+LT+  + VKA +G  YV
Sbjct: 334 CWSKKAVVCKKLTDRSYKVKAEDGGVYV 361


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 131 KKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKALQ 244
           K+ ++ +E+++R    R+      KQ+D SEN  + L+
Sbjct: 447 KRNLQLQELKARADAAREAATSCKKQFDESENQRRQLE 484


>SB_22253| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 870

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 80  STSDMEPLREKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKAL 241
           S S  +   EKA +  +K   +   +ES  ++ RD  KD  ++   SEN+L  L
Sbjct: 263 SGSKHDDAEEKARRKEKKMKKDRPSLESSSRKKRDKDKDAMRERLRSENELPHL 316


>SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3)
          Length = 244

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 104 REKAFQDYRKKLMEXKEVESRLKEGR----DXLKDLTKQYDXSENDLKAL 241
           REK  +  +KKL E +++E++   G     D LK L+++ D  E +L AL
Sbjct: 193 REKLGRKLKKKLCEIQQLEAKKNSGGKLDCDQLKKLSRKRDL-EEELAAL 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,048,732
Number of Sequences: 59808
Number of extensions: 180523
Number of successful extensions: 480
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)