Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0497.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 89 2e-18
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 86 1e-17
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 30 1.1
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 29 2.5
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 29 2.5
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr... 28 4.3
U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical p... 27 10.0
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 88.6 bits (210), Expect = 2e-18
Identities = 51/137 (37%), Positives = 70/137 (51%)
Frame = +2
Query: 53 QFKLFTMPASTSDMEPLREKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDL 232
QF P + +E R KA YR+KL E +++E +LK+ R ++TKQ+D SEND+
Sbjct: 5 QFSNMVEPTGPAIVEDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDI 64
Query: 233 KALQSVGX*LXKS*NSSQXXXXXXXXXXXXXXXXXVVGNLTKXCLKEEHXFALDMXXLTI 412
K+LQSVG + + ++ K LK+ +LDM LTI
Sbjct: 65 KSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTI 124
Query: 413 MXXLXXEVDPLVYNMSH 463
M L EVDPLVY MSH
Sbjct: 125 MRQLPREVDPLVYKMSH 141
Score = 74.1 bits (174), Expect = 5e-14
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = +1
Query: 256 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
IVGEVLKQL+EEKFIVKATNGPRYVVGCRR ++K LK GT V
Sbjct: 73 IVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRV 115
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 86.2 bits (204), Expect = 1e-17
Identities = 49/130 (37%), Positives = 68/130 (52%)
Frame = +2
Query: 74 PASTSDMEPLREKAFQDYRKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKALQSVG 253
P + +E R KA YR+KL E +++E +LK+ R ++TKQ+D SEND+K+LQSVG
Sbjct: 4 PTGPAIVEDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVG 63
Query: 254 X*LXKS*NSSQXXXXXXXXXXXXXXXXXVVGNLTKXCLKEEHXFALDMXXLTIMXXLXXE 433
+ + ++ K LK+ +LDM LTIM L E
Sbjct: 64 QIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPRE 123
Query: 434 VDPLVYNMSH 463
VDPLVY MSH
Sbjct: 124 VDPLVYKMSH 133
Score = 74.1 bits (174), Expect = 5e-14
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = +1
Query: 256 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
IVGEVLKQL+EEKFIVKATNGPRYVVGCRR ++K LK GT V
Sbjct: 65 IVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRV 107
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 256 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
++G+ L+ + + IV +T G Y V LD+ +LK G V
Sbjct: 84 VIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSV 126
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 259 VGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
VGEV K + ++K +VK +Y+V +D L GT V
Sbjct: 78 VGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRV 119
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 259 VGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
VGEV K + ++K +VK +Y+V +D L GT V
Sbjct: 99 VGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRV 140
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 259 VGEVLKQLTEEKFIVKATNGPRYVVGCRRXLDKXMLKGGTXV 384
VGEV K + ++K +VK +YVV + +D L G V
Sbjct: 83 VGEVSKAMDKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARV 124
>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical
protein W08D2.7 protein.
Length = 1026
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 128 RKKLMEXKEVESRLKEGRDXLKDLTKQYDXSENDLKALQSV 250
R+K +E + +E+ RD +KDL KQ++ ++ +K L ++
Sbjct: 781 REKSLEGR-LETHSMTKRDNMKDLKKQFEQKQDAVKELNAL 820
>U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical
protein C28C12.1 protein.
Length = 200
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 74 PASTSDMEPLREKAFQDYRKKLMEXKEVESRLKEGRDXLKD 196
PAS + PL + +K++E K+VE+ K+ + +KD
Sbjct: 41 PASQPALSPLDLTPAKKVEEKVIEEKKVENNPKKEEEPVKD 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,966,502
Number of Sequences: 27780
Number of extensions: 140138
Number of successful extensions: 428
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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