Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0496.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   2.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   9.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   9.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   9.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   9.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   9.4  

>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 264 NEIKRGERKEVEGEYEKDYE 205
           NE++  E+ + EGEY K YE
Sbjct: 102 NELE--EKYDKEGEYRKKYE 119


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 364 KVPNTKNTVKRKSMKNVGPTT 302
           K+PNTKN  ++ +   V  TT
Sbjct: 293 KLPNTKNVRRKTNPAGVTTTT 313


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 364 KVPNTKNTVKRKSMKNVGPTT 302
           K+PNTKN  ++ +   V  TT
Sbjct: 293 KLPNTKNVRRKTNPAGVTTTT 313


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 270 GTNTVLANGELVVGP 314
           G   VLANG LV  P
Sbjct: 70  GLRQVLANGNLVFPP 84


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 296  SIGKNGISAERTKSREVKEKKSKANMRKTTKGK 198
            S G   ++ ++TK    +EKK     ++  K K
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRKAKQK 1090


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 296  SIGKNGISAERTKSREVKEKKSKANMRKTTKGK 198
            S G   ++ ++TK    +EKK     ++  K K
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRKAKQK 1090


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 296  SIGKNGISAERTKSREVKEKKSKANMRKTTKGK 198
            S G   ++ ++TK    +EKK     ++  K K
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRKAKQK 1090


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 296  SIGKNGISAERTKSREVKEKKSKANMRKTTKGK 198
            S G   ++ ++TK    +EKK     ++  K K
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRKAKQK 1090


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,109
Number of Sequences: 336
Number of extensions: 844
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)