Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0496.Seq
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.0
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 1.0
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 1.0
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.3
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 2.3
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 4.1
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 4.1
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 25 5.4
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 5.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 5.4
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 25 7.1
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 7.1
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 7.1
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 24 9.4
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 24 9.4
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 24 9.4
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 24 9.4
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.0
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = -1
Query: 272 AERTKSREVKEKKSKA-NMRKTTKGKRT-TADPPN------IQREKERVWKNQKKGTASS 117
A R K E K+ SKA ++ + KR+ P N IQR +ER+ + K T
Sbjct: 394 AARAKENEAKDLYSKAESITQDLNAKRSHPPQPANLDYSSAIQRAQERLTLEESKLTDLR 453
Query: 116 RLSPSRWVN 90
PS++VN
Sbjct: 454 TAEPSQYVN 462
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.5 bits (58), Expect = 1.0
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 281 GISAERTKSREVKEKKSKANMRKTTKG-KRTTADPPNIQREKERVWKNQKKGTASSRLSP 105
G ++ KS EV + SK N K KG K+ + DP +++ + + TA +
Sbjct: 2 GSKGKKGKSSEVNLETSK-NKEKNIKGKKKNSLDPIEKNKQETAGLQTTSRPTAKQLVGG 60
Query: 104 SRW 96
S W
Sbjct: 61 SSW 63
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 1.0
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -1
Query: 275 SAERTKSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 114
SA+ S + KEKKSK +K K K +AD I ++ + K KKG + ++
Sbjct: 61 SADEEASVKRKEKKSKHEHKKHKKDK-PSADKDRISKKDK---KKSKKGKSKTK 110
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 2.3
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -1
Query: 287 KNGISAERTKSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 117
K + ++ K K+ K N+ T G T N +EK R WK + + +S
Sbjct: 144 KTDVISKALKFHHTIYKERKINIELTAGGGGKTEARMNKIKEKNRKWKEEMRQRVAS 200
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = -1
Query: 284 NGISAERTKSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK 132
NG SAE K +++++++++ + + +R + QRE+E+ + Q+K
Sbjct: 69 NG-SAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEK 118
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 254 REVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQK 135
+E KEKK+ ++ + GK+ +P + E+ K+ K
Sbjct: 210 KEEKEKKTAVDVSDSVNGKKRKTEPAGEGEQTEKKSKSTK 249
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 4.1
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = -1
Query: 254 REVKEKKSKANMRKTTKGKRTTADPPNIQREKE-----RVWKNQKKGTASSRLSPSR 99
R+ KEKK ++ K K A QR +E R K KKG A + PS+
Sbjct: 175 RKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSKKGKAPKKKKPSK 231
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 290 GKNGISAERTKSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQK 135
GK+ IS K+ E +E K R+TT + T + ++ K + + Q+
Sbjct: 14 GKDLISNNEAKNHEDEETHQKKRRRRTTDAEATLLEQYFLKTPKPSLIERQE 65
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 245 KEKKSKANMRKTTKGKRTTADPPNIQREKE 156
K+K + N +K KGK T + P ++E
Sbjct: 518 KDKDASRNNKKNKKGKHTQIEDPTAASKEE 547
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 188 ADPPNIQREKERVWKNQKKGTASSRLSPSRWVNP 87
A P I+++ R+W + K+G S L R ++P
Sbjct: 177 AAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSP 210
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.6 bits (51), Expect = 7.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 272 AERTKSREVKEKKSKANMRK-TTKGKRTTADPPNIQREKERVWKNQK 135
A + S++ K+KK K N K T + + + D P I E +KNQK
Sbjct: 683 ASTSVSKKRKQKKKKKNSGKLTIEAEHVSNDSP-IINEAPFDYKNQK 728
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 24.6 bits (51), Expect = 7.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -1
Query: 275 SAERTKSREVKEKKSKANMRKTTKGKR----TTADPPNIQREKERVWKNQKK 132
S E R+VKEK + N + +G+R Q+E ER K+ +K
Sbjct: 49 SMEEDDHRQVKEKNTSENSVEQKRGRRMFGALLGTLGKFQQESEREQKSARK 100
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = -1
Query: 260 KSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWVNP 87
K EV+ + + N+ + TK D P Q +K+ ++++ + S S+ V+P
Sbjct: 7 KMYEVEPSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSVSP 64
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +3
Query: 15 ISFPFPVSTLPCRNTILNYPASSSRIYPXXXXXXXXXXXFLLIFPNSLFLSLN 173
+ F +P+ PCRN++ S + +L+F +SL L L+
Sbjct: 293 VLFSYPLQCHPCRNSVYQAIRRSYSAHDMSDGYHAVITLCILLFTHSLALLLS 345
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = -1
Query: 296 SIGKNGISAERTKSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 117
+IG N + TKS + + S ++ TTK K P + + N +
Sbjct: 159 TIGSNYNMLQSTKSTASQRRMSDSSTPSTTKSKEKIFSPKALSSPTQGASSNVTPESPPE 218
Query: 116 RLSPSRWVNP 87
+ PS ++P
Sbjct: 219 KPIPSFVLSP 228
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 296 SIGKNGISAERTKSREVKEKKSKANMRKTTKGKRTTADPPNIQRE 162
S N S +T + E + +++KTT TA P N ++E
Sbjct: 4 SSSHNSFSGSKTNAAEGQNSIDGLSLKKTTSPFILTAYPSNEEKE 48
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 260 KSREVKEKKSKANMRKTTKGKRTT 189
KSRE + KK K R +KG TT
Sbjct: 740 KSRESRLKKEKHKNRPASKGTYTT 763
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 24.2 bits (50), Expect = 9.4
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = -3
Query: 270 RANEIKRGERKEVEGEYEK 214
+ NE+K+ + K+++ EY+K
Sbjct: 268 KVNEVKQSDSKKLQDEYQK 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 988,494
Number of Sequences: 5004
Number of extensions: 14004
Number of successful extensions: 73
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -