Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0496.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 31 0.32
01_05_0151 + 18618340-18618419,18619756-18620116 29 1.3
01_01_0012 + 71903-72935,73468-73981,74619-76008 29 1.3
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 29 2.3
02_01_0526 - 3830705-3830932,3831684-3831748,3831958-3832104,383... 28 3.0
03_06_0713 - 35687672-35689219 28 4.0
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 28 4.0
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 27 5.3
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 27 5.3
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 27 5.3
06_02_0013 - 10581449-10585105 27 7.0
12_02_0535 + 20117205-20117401,20118556-20118628,20118725-201187... 27 9.2
06_01_1020 - 7975019-7975201,7975324-7975425,7976178-7976231,797... 27 9.2
05_03_0651 + 16605662-16605722,16605920-16606185 27 9.2
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249... 27 9.2
>12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 31.5 bits (68), Expect = 0.32
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = -1
Query: 263 TKSREVKEKK--SKANMRKTTKGKR---TTADPPNIQREKERVWKNQKKG 129
TK V++K SKA+ RK KG+ +T+D PN + K+ V Q+KG
Sbjct: 875 TKKTSVRDKPYISKADRRKLKKGQNVGDSTSDSPNGEAAKKPVNSQQEKG 924
>01_05_0151 + 18618340-18618419,18619756-18620116
Length = 146
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = -1
Query: 305 DKFSIGKNGIS--AERTKSREVKEKKSKANMRKTTKGKRTTADP-PNIQREKE 156
DK++ K +S + +S++ K+K+S++N RK KGK T P REK+
Sbjct: 57 DKYNSSKRSVSLVQKHKESKKEKKKRSRSNERK-KKGKGTINHPWKPCDREKD 108
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -1
Query: 275 SAERTKSREV--KEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPS 102
S+ R +SR + + KKS + ++ K R + P+ R R S+LSP+
Sbjct: 598 SSRRNRSRSISPRHKKSSRSDSRSPKRHREESLSPSKSRRSARAGSRSPGQHKGSKLSPT 657
Query: 101 RWVNPA*RSRIIQNR 57
R + + RSR ++R
Sbjct: 658 RDHHSSRRSRRSRSR 672
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -1
Query: 314 RTHDKFSI-GKNGISAERTKSREVKEKKSKANMRKTTKGKRTTADP---PNIQREKERVW 147
R+H S GKN + + R +K K + + K KGK+ P P ++ E+ +
Sbjct: 338 RSHQTESAEGKNVVVNDSVPPRMIKPKNPEVGVWKVNKGKKPVLKPRPRPTFKQLLEK-Y 396
Query: 146 KNQKKGTASSRLSPSR 99
+QK SRL ++
Sbjct: 397 TSQKNTNVFSRLGGAK 412
>02_01_0526 -
3830705-3830932,3831684-3831748,3831958-3832104,
3832208-3832256
Length = 162
Score = 28.3 bits (60), Expect = 3.0
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = -1
Query: 317 RRTHDKFSIGKNGISAER-TKSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKN 141
RR K G G ER +K + KEK+ K K + D + + W
Sbjct: 50 RRRRKKKKHGDRGKDKERDSKEKHSKEKEKSKRKHKDDDFKEISKDDYFAKNNEFATWLK 109
Query: 140 QKKGTASSRLS 108
++KG S LS
Sbjct: 110 EEKGKFFSDLS 120
>03_06_0713 - 35687672-35689219
Length = 515
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 320 LHTFPLHRIFRIRNLCCMSRRCRYPPGVQIRVLHIH 427
LH P + R+R L +S RY P + R+LH+H
Sbjct: 83 LHPSPRRNLARLRRLLSVSLLRRY-PALARRLLHLH 117
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 299 FSIGKNGISAERTKS--REVKEKKSKANMRKTTKGKRTTAD 183
FS K ++ +R S +E+K+KKS +K TKGK +A+
Sbjct: 539 FSRKKKSVTPKRPSSSEKEIKDKKSSG--KKVTKGKGESAE 577
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -1
Query: 278 ISAERTKSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSR 99
IS R++SR + +S++ R + R+ + + +E+ R +Q + R SPSR
Sbjct: 203 ISRSRSRSRSISRSRSRSYSRSRSPRSRSASRSHSPVKERSRS-ASQSRSPVKER-SPSR 260
Query: 98 WVNPA 84
PA
Sbjct: 261 SPPPA 265
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -1
Query: 266 RTKSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRW 96
R K RE +E++ + ++ K K + ++EK++ K +KK + W
Sbjct: 139 RRKEREEEERRRRRKDKERRKRKEKERERERKKKEKKKRRKEEKKNLGKKAAVTNSW 195
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -1
Query: 287 KNGISAERTKSREVKEK-KSKANMRKTTKGKRTTADPPNIQREKE--RVWKNQKK 132
K+ A++ +E+K+K K +A MRK K ++ A +REKE + K Q+K
Sbjct: 332 KDTQKAQKQVEKELKQKEKEEARMRKQQKKQQEEALREQKRREKEEAEMKKQQRK 386
>06_02_0013 - 10581449-10585105
Length = 1218
Score = 27.1 bits (57), Expect = 7.0
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -1
Query: 305 DKFSIGKNGIS------AERTKSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWK 144
D F K+GIS A+ + ++KE+ + N KTT + + DP N + + V
Sbjct: 555 DDFKTLKDGISDPEPQSADSHQVTDMKEQSTMTNDLKTTDTEGSMPDPDNRSTDSQHVIN 614
Query: 143 NQKKGTASSRLSPSRWVNP 87
++ +SS P V P
Sbjct: 615 KMEQ--SSSTDEPGTVVTP 631
>12_02_0535 +
20117205-20117401,20118556-20118628,20118725-20118787,
20119167-20119220,20119303-20119359,20119615-20119707
Length = 178
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = -1
Query: 314 RTHDKFSIGKNGISAERTKSREVKEKKSKANMRKTTKGKRTTADPPNIQR 165
R H K + ER+K R K KSK T + T+ P + +
Sbjct: 80 RKHKKSRSSRKSRERERSKDRHSKRDKSKHKELYTEENSERTSGPVQLSK 129
>06_01_1020 -
7975019-7975201,7975324-7975425,7976178-7976231,
7978065-7978475
Length = 249
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 188 ADPPNIQREKERVWKNQKKGTASSRLSPS 102
+DP Q +K + K+ + +ASSRLSPS
Sbjct: 146 SDPVLDQHKKMNLGKHLQSSSASSRLSPS 174
>05_03_0651 + 16605662-16605722,16605920-16606185
Length = 108
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = -1
Query: 311 THDKFSIGKNGISAERTKSREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK 132
TH N I E + + K K KGKR DP R RV +Q +
Sbjct: 30 THAIHIADDNEIDEETDEDESTAKIKRDGGGSKMDKGKRARVDPKRWYRRCPRVMNSQHR 89
>03_06_0617 -
35124114-35124148,35124243-35124335,35124415-35124919,
35125039-35125238,35125514-35125604,35125699-35126769
Length = 664
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -1
Query: 266 RTKSREVKEKKSKANMRKTTKG-KRTTADPPNIQREKERVWKNQKKGTASSRLSPSR 99
R K + ++ + K ++ ++G KRT+ D + +K+++ KN+ K ++ + S+
Sbjct: 545 RGKQKGRRKSREKNINKEPSRGTKRTSGDSTIEESQKQKLQKNKSKASSGGQKKTSK 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,351,891
Number of Sequences: 37544
Number of extensions: 91152
Number of successful extensions: 451
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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