Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0494.Seq
         (399 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    45   5e-04
UniRef50_Q61343 Cluster: Beta-D-galactosidase fusion protein; n=...    38   0.072
UniRef50_UPI00015B4965 Cluster: PREDICTED: similar to GA15372-PA...    32   4.8  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 45.2 bits (102), Expect = 5e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -1

Query: 255  CFENIFDIPYHLRKNIGV 202
            CFENIFDIPYHLRKNIGV
Sbjct: 1169 CFENIFDIPYHLRKNIGV 1186



 Score = 31.1 bits (67), Expect = 8.3
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -2

Query: 290  LLHKPGQGKICL 255
            LLHKPGQGKICL
Sbjct: 1157 LLHKPGQGKICL 1168


>UniRef50_Q61343 Cluster: Beta-D-galactosidase fusion protein; n=1;
           Mus musculus|Rep: Beta-D-galactosidase fusion protein -
           Mus musculus (Mouse)
          Length = 121

 Score = 37.9 bits (84), Expect = 0.072
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = -3

Query: 358 NWVPGPPXRXTVXISLISNS 299
           +WVPGPP R TV ISLISNS
Sbjct: 18  SWVPGPPSRSTVSISLISNS 37


>UniRef50_UPI00015B4965 Cluster: PREDICTED: similar to GA15372-PA;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           GA15372-PA - Nasonia vitripennis
          Length = 977

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 367 YRANWVPGPPXRXTVXISLISNSRPLFYTSLVKEKYALLRKHIRY-SLPSP*EYRCLIQL 191
           Y +   PG   +    I+  S  R L   ++VKE Y L+RK  RY +L  P ++  +I++
Sbjct: 709 YASELTPGERHKWREIITTESTLRTLLTEAIVKEDYELIRKDARYVNLFPPAQWDVIIRI 768


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,913,726
Number of Sequences: 1657284
Number of extensions: 6058943
Number of successful extensions: 10607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10605
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)