Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0494.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99...    29   1.0  
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592           27   5.5  
07_03_1457 - 26674128-26674783,26675741-26675962,26676065-26676362     27   7.2  
01_03_0281 - 14570635-14574633                                         27   7.2  

>03_01_0128 +
           995103-995174,996500-996606,996909-997041,997127-997270,
           997589-997747,997865-997938,998024-998099,998476-998531,
           998651-998738,998824-998964,999057-999206,999320-999476,
           1001183-1001773,1002673-1003532
          Length = 935

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 329 DGXDKLDIEFATALLHKPGQGKICLASKTYSIFLTISVRISVFNTTKHDLE 177
           DG D+   EF     +  G+   CLA++   + ++IS  + +FN  KH  E
Sbjct: 688 DG-DECKTEFNAKHAYLLGKLSKCLANRPKEVSVSISFALDIFNAQKHAAE 737


>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
          Length = 371

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 394 WPVNCNTTHYRANWVPGPPXRXTVXISLISNSRPL 290
           W + C++ H RA ++  PP +  V   +    RPL
Sbjct: 107 WLIPCDSRHGRALFITQPPLQLLVLDPITGMERPL 141


>07_03_1457 - 26674128-26674783,26675741-26675962,26676065-26676362
          Length = 391

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 343 GPVPNSPYSESYYNXPAXR 399
           GPV  SPY E+++  P  R
Sbjct: 70  GPVARSPYGETFFRRPTGR 88


>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 24  LSRQHNYIFFLPGTKPGLFMYAD 92
           ++  HNYI FLP T   LF+ +D
Sbjct: 508 IAEGHNYIEFLPNTVRHLFLCSD 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,177,572
Number of Sequences: 37544
Number of extensions: 151290
Number of successful extensions: 285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)