Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0494.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13900.1 68414.m01631 calcineurin-like phosphoesterase family...    27   6.1  
At5g45460.1 68418.m05585 expressed protein                             26   8.0  

>At1g13900.1 68414.m01631 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 656

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 56  SRYKTGAFYVC*LKLNKEKVIVKIVRSH 139
           S Y+TG F    L  NKEK+ V  V +H
Sbjct: 540 SMYRTGEFGYTRLVANKEKLTVSFVGNH 567


>At5g45460.1 68418.m05585 expressed protein
          Length = 703

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 203 TPIFLRRW*GISNMFSKQGIFFLDQACVKERSRI 304
           TP F RRW G  N+F+     FL  A  K + RI
Sbjct: 441 TPFFFRRWCGSINVFN-----FLAYATKKRQKRI 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,720,422
Number of Sequences: 28952
Number of extensions: 134495
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)