Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0493.Seq
         (398 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    44   0.001
UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep: ...    38   0.072
UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus lu...    33   1.6  
UniRef50_Q0PVD7 Cluster: Lst1p; n=1; Pichia pastoris|Rep: Lst1p ...    33   2.1  
UniRef50_UPI0000F1F069 Cluster: PREDICTED: hypothetical protein;...    32   3.6  
UniRef50_Q7RAM4 Cluster: Putative uncharacterized protein PY0647...    31   8.3  

>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 44.0 bits (99), Expect = 0.001
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +3

Query: 72  GKCFR*CSSCDDPRISPLTSQYECPQ 149
           GKCFR C S ++ RISPLTS+Y+CPQ
Sbjct: 259 GKCFRSCLSPENLRISPLTSEYKCPQ 284


>UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep:
          Predicted protein - Nematostella vectensis
          Length = 79

 Score = 37.9 bits (84), Expect = 0.072
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = -3

Query: 63 FHQSRTKVRGSKAIRYRPSSN 1
          F   RTKVRGSK IRYRPSSN
Sbjct: 6  FRCQRTKVRGSKTIRYRPSSN 26


>UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus
          lucimarinus CCE9901|Rep: Predicted protein -
          Ostreococcus lucimarinus CCE9901
          Length = 72

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -3

Query: 63 FHQSRTKVRGSKAIRYRPSSN 1
          FH  RTKV GSK IRY PS N
Sbjct: 6  FHCQRTKVGGSKMIRYHPSLN 26


>UniRef50_Q0PVD7 Cluster: Lst1p; n=1; Pichia pastoris|Rep: Lst1p -
           Pichia pastoris (Yeast)
          Length = 919

 Score = 33.1 bits (72), Expect = 2.1
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +2

Query: 80  LSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTXXIEPRSYSIIPCXKYSSSIXSRF 259
           +SL+  ++  K + S + IR    + +  YLG  KT   +  +  +IP    ++S+   F
Sbjct: 527 ISLLDSIQAVKGYQSQLKIRCSAGLQVTKYLGSFKTSNSD--ADPLIPIVTSNTSVGCLF 584

Query: 260 EHSNLXKVKXSAH 298
           +H      K  AH
Sbjct: 585 KHDGKLSTKNDAH 597


>UniRef50_UPI0000F1F069 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 389

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 83  SLMFVLRRSKNFTSNVAIRMPPVIPINHYLG 175
           S+M V+ RS  FT    IR+PP+  I+H+LG
Sbjct: 20  SVMGVVERSAVFTRQRDIRLPPIPGISHHLG 50


>UniRef50_Q7RAM4 Cluster: Putative uncharacterized protein PY06475;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY06475 - Plasmodium yoelii
           yoelii
          Length = 24

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 123 EVKFLDRRKTNISESICQRCFH 58
           EVKFLD  +TN  ESIC + FH
Sbjct: 3   EVKFLDFLETNNCESICLKYFH 24


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 327,695,346
Number of Sequences: 1657284
Number of extensions: 5050848
Number of successful extensions: 10001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10001
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)