Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0493.Seq
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   2e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   2e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   2e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   2e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   2e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   1e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   3e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   1e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.002
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.002
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.009
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   4.3  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 30/37 (81%), Positives = 31/37 (83%)
 Frame = -1

Query: 113 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           SWI  RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = -1

Query: 98  RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = -1

Query: 98  RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = -1

Query: 98  RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = -1

Query: 98  RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 42


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 26/31 (83%), Positives = 27/31 (87%)
 Frame = -1

Query: 95  RTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           RT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVL 59


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -1

Query: 95 RTSAKAFAKGVFINQERKLEVRRRLDT 15
          RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2  RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 22/33 (66%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
 Frame = -1

Query: 98  RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
           R+T+  ++ AK VFINQERKLE RRR DT LVL
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVL 40



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
           VKFLD RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -1

Query: 98  RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
           R+T+  ++  + VFINQERKLE RRR DT LVL
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVL 40



 Score = 33.9 bits (74), Expect = 0.049
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
           VKFLD RKTN  ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -3

Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -1

Query: 98  RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
           R+T+  ++  +  FINQERKLE RRR DT LVL
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -3

Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -1

Query: 98  RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
           R+T+  ++  +  FINQERKLE RRR DT LVL
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -1

Query: 98  RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
           R+T+  ++  +  FINQERKLE RRR DT LVL
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40



 Score = 29.9 bits (64), Expect = 0.80
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 117 KFLDRRKTNISESICQRCFHQSRTKV 40
           + L  RKTN  ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 181 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 71
           Q  EV  +++  GH Y C   GE++ S++D H+   +P
Sbjct: 7   QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 102 DDPRISPLTSQYEC 143
           DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 344 PAFFRTPAHRRYAPQTC 394
           P FF TP H+ Y P  C
Sbjct: 307 PYFFNTPEHQDYMPDPC 323


>SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 151 NWGHSYCDVRGEILGSSQ 98
           N+GHSY  +RG I G +Q
Sbjct: 635 NFGHSYVQIRGYIGGEAQ 652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,216,926
Number of Sequences: 59808
Number of extensions: 162503
Number of successful extensions: 326
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)