Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0493.Seq
         (398 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10890.1 68417.m01772 expressed protein                             27   3.5  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    27   4.6  

>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 102 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSN 1
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +2

Query: 101 RRSKNFTSNVAIRMPPVIPINHYLGVLKTXXIEPRSYSIIPCXKYSSSIXSRFEHSNLXK 280
           RRS + + N+    PP+ PI+H    L    I+PR    +   +  +S  S      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 281 VKXSAHL 301
               AHL
Sbjct: 112 KAAEAHL 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,079,767
Number of Sequences: 28952
Number of extensions: 113476
Number of successful extensions: 241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)