Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0489.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    20   7.8  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = -1

Query: 252 SCRKGHQGQEVARAVNS-TIFXTTAILHSPK---GVSKEKRATNSFLFYIFYKACNVTLF 85
           S R+G Q   + +   + + F T   LHS        KEK     ++ Y FYK  +    
Sbjct: 384 SRREGKQLNPLNKGTEADSSFVTLPQLHSLDEWDDTLKEKADFQYYVSYDFYKMNHPVYH 443

Query: 84  YNLYKVIHNISET 46
            + +   HN++ T
Sbjct: 444 KDPHYGFHNVTNT 456


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 367 FQEFPPLGRXAVRDMR 320
           +  FPP  R  +RD R
Sbjct: 81  YPRFPPYDRMDIRDRR 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,427
Number of Sequences: 336
Number of extensions: 1356
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)