Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0489.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 71 3e-13
03_01_0547 + 4093196-4093657,4094267-4095148 71 3e-13
03_01_0544 + 4082528-4082989,4083585-4084466 71 3e-13
03_01_0543 + 4076981-4077442,4078145-4079026 71 3e-13
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 32 0.19
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 30 0.77
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 30 0.77
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 1.8
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 27 4.1
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 71.3 bits (167), Expect = 3e-13
Identities = 33/49 (67%), Positives = 38/49 (77%)
Frame = -3
Query: 397 VPSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
+P+KP+ VE F E+PPLGR AVRDMRQT AVGVIK V K+ G KVTK
Sbjct: 393 IPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTK 441
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 71.3 bits (167), Expect = 3e-13
Identities = 33/49 (67%), Positives = 38/49 (77%)
Frame = -3
Query: 397 VPSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
+P+KP+ VE F E+PPLGR AVRDMRQT AVGVIK V K+ G KVTK
Sbjct: 393 IPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTK 441
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 71.3 bits (167), Expect = 3e-13
Identities = 33/49 (67%), Positives = 38/49 (77%)
Frame = -3
Query: 397 VPSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
+P+KP+ VE F E+PPLGR AVRDMRQT AVGVIK V K+ G KVTK
Sbjct: 393 IPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTK 441
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 71.3 bits (167), Expect = 3e-13
Identities = 33/49 (67%), Positives = 38/49 (77%)
Frame = -3
Query: 397 VPSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
+P+KP+ VE F E+PPLGR AVRDMRQT AVGVIK V K+ G KVTK
Sbjct: 393 IPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTK 441
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 388 KPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAV 287
K +CVE F LGR +R T AVG++ V
Sbjct: 617 KEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 29.9 bits (64), Expect = 0.77
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 385 PLCVEXFQEFPPLGRXAVRDMRQTXAVGVI 296
P+CV+ F + LGR +R T AVGV+
Sbjct: 642 PVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 29.9 bits (64), Expect = 0.77
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 385 PLCVEXFQEFPPLGRXAVRDMRQTXAVGVI 296
P+CV+ F + LGR +R T AVGV+
Sbjct: 642 PVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 78 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 158
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 382 LCVEXFQEFPPLGRXAVR 329
+C+E F +FP LGR +R
Sbjct: 398 ICIENFSDFPQLGRFTLR 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,400,014
Number of Sequences: 37544
Number of extensions: 125270
Number of successful extensions: 258
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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