Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0489.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 80   6e-16
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            33   0.11 
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)                    29   1.4  
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)                   27   4.3  
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)                 27   7.4  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             27   7.4  
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.4  
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 80.2 bits (189), Expect = 6e-16
 Identities = 36/49 (73%), Positives = 41/49 (83%)
 Frame = -3

Query: 397 VPSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
           +PSKP+CVE F EFPPLGR AVRDM+QT AVGVIK+V+  EA GGK TK
Sbjct: 264 IPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVDKTEAAGGKTTK 312


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 391 SKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVI 296
           S+P+CVE ++++  LGR  +R    T A GVI
Sbjct: 47  SRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 48  FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 188
           +QI+Y+  Y   KI +H++  K  RK + L  FFPS  H +    +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355


>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
          Length = 495

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 285 LTALMTPTAXVCLMSRTAXRPRGGNSWKXSTH 380
           LT+L  PT    L  RT  +PR G  W+ + H
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIH 440


>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
          Length = 461

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 210 VNSTIFXTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISE 49
           V++ +    A++  P  V K+KR   SFL    Y    V +F ++ +V+H ++E
Sbjct: 3   VSTDLAKLEAVISWP--VPKKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTE 54


>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
          Length = 903

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 397 VPSKPLCVEXFQEFPPLGRXAVRDMRQ 317
           VP++P CV  F EF  +    +RD+ Q
Sbjct: 383 VPAQPQCVASFPEFCAVSVSYIRDLSQ 409


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 10 YEFTL*FAVITKCFRYI 60
          Y + + FA+IT+CFRY+
Sbjct: 34 YVYPVFFAMITRCFRYV 50


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 78  NYKIMLHYKPCKKYRKGMSL*PF 146
           +YK  L  KPCK +R+G    PF
Sbjct: 253 DYKSALGAKPCKYFREGKGTCPF 275


>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = -1

Query: 219 ARAVNSTIFXTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 40
           AR     I   T     P+ V K    T + +  IF  +    L +++Y+++H    + C
Sbjct: 427 ARRHRRQINTNTVSPQPPRQVDKAA-VTVAMVILIFLSSWIPILCFSVYELVHTSRVSVC 485

Query: 39  YDCKLKCKF 13
            D + + +F
Sbjct: 486 KDLRFRLRF 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,678,608
Number of Sequences: 59808
Number of extensions: 146904
Number of successful extensions: 306
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)