Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0489.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    72   2e-13
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    72   2e-13
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    72   2e-13
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    34   0.033
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   1.2  
AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical...    27   6.5  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/49 (65%), Positives = 38/49 (77%)
 Frame = -3

Query: 397 VPSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
           +P+KPLCVE F ++ PLGR AVRDMRQT AVGVIK+V   +   GKVTK
Sbjct: 371 IPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVTK 419


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/49 (65%), Positives = 38/49 (77%)
 Frame = -3

Query: 397 VPSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
           +P+KPLCVE F ++ PLGR AVRDMRQT AVGVIK+V   +   GKVTK
Sbjct: 405 IPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVTK 453


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/49 (65%), Positives = 38/49 (77%)
 Frame = -3

Query: 397 VPSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
           +P+KPLCVE F ++ PLGR AVRDMRQT AVGVIK+V   +   GKVTK
Sbjct: 405 IPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVTK 453


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 34.3 bits (75), Expect = 0.033
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -3

Query: 388 KPLCVEXFQEFPPLGRXAVRDMRQTXAVG-VIKAV 287
           +P  +E F+E+P LGR  +RD  +T A+G V+K V
Sbjct: 497 EPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 147 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 40
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical
           protein Y47G6A.31 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 87  FYNLYKVIHNISETFCYDC 31
           F +L K++ N   TFCY C
Sbjct: 44  FQHLPKLLENCGHTFCYSC 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,262,445
Number of Sequences: 27780
Number of extensions: 114321
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)