Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0489.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    83   1e-18
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    78   3e-17
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   0.97 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   1.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   1.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   1.3  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   6.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 83.0 bits (196), Expect = 1e-18
 Identities = 40/49 (81%), Positives = 42/49 (85%)
 Frame = -3

Query: 397 VPSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
           VPSKP+C E FQEFPPLGR AVRDMRQT AVGVIKAV FK+A  GKVTK
Sbjct: 405 VPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTFKDA-AGKVTK 452


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 78.2 bits (184), Expect = 3e-17
 Identities = 37/48 (77%), Positives = 41/48 (85%)
 Frame = -3

Query: 394 PSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
           P+KP+CVE FQEFPPLGR AVRDMRQT AVGVIK+V FK+   GKVTK
Sbjct: 406 PTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDT-QGKVTK 452


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 136 CSPFFLRNTFR*MKYRSCXKN 198
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 175 KYRSCXKNCAVNSSSYFLPLVAFS 246
           K+  C KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 175 KYRSCXKNCAVNSSSYFLPLVAFS 246
           K+  C KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 175 KYRSCXKNCAVNSSSYFLPLVAFS 246
           K+  C KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 145 FFLRNTFR*MKYRSCXKN 198
           FF R+  + ++YR C KN
Sbjct: 41  FFRRSIQQKIQYRPCTKN 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,321
Number of Sequences: 438
Number of extensions: 1502
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)