Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0489.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...    72   2e-13
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...    72   2e-13
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...    72   2e-13
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...    72   2e-13
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-...    60   7e-10
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    33   0.053
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    30   0.65 
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    29   1.5  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    28   2.6  
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ...    27   4.6  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 33/48 (68%), Positives = 39/48 (81%)
 Frame = -3

Query: 394 PSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
           P+KP+ VE F E+PPLGR AVRDMRQT AVGVIK+V+ K+  G KVTK
Sbjct: 394 PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTK 441


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 33/48 (68%), Positives = 39/48 (81%)
 Frame = -3

Query: 394 PSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
           P+KP+ VE F E+PPLGR AVRDMRQT AVGVIK+V+ K+  G KVTK
Sbjct: 394 PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTK 441


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 33/48 (68%), Positives = 39/48 (81%)
 Frame = -3

Query: 394 PSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
           P+KP+ VE F E+PPLGR AVRDMRQT AVGVIK+V+ K+  G KVTK
Sbjct: 394 PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTK 441


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 33/48 (68%), Positives = 39/48 (81%)
 Frame = -3

Query: 394 PSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGKVTK 251
           P+KP+ VE F E+PPLGR AVRDMRQT AVGVIK+V+ K+  G KVTK
Sbjct: 394 PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTK 441


>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
           domain-containing protein similar to SP|P13905
           Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
           thaliana}; contains Pfam profile PF03143: Elongation
           factor Tu C-terminal domain
          Length = 104

 Score = 59.7 bits (138), Expect = 7e-10
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = -3

Query: 394 PSKPLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAVNFKEAGGGK 260
           P+KP+ VE +  +PPLGR A+RDMRQT  VGVIK+V  K+  G K
Sbjct: 60  PTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSVVKKDPSGAK 104


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 33.5 bits (73), Expect = 0.053
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 382 LCVEXFQEFPPLGRXAVRDMRQTXAVGVI 296
           +C+E F +FP LGR  +R   +T AVG +
Sbjct: 494 ICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 385 PLCVEXFQEFPPLGRXAVRDMRQTXAVGVIKAV 287
           P+CVE F E   LGR  +R   +T A+G +  +
Sbjct: 631 PVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -1

Query: 117 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 19
           I+ K C+   V LFY   ++  N   S  FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -1

Query: 117 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 19
           I+ K C+   V L+Y   ++  N   S  FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616


>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 495

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 63  HNISETFCYDCKLKCKF 13
           + ++  FC+ C+L+CKF
Sbjct: 444 NGVTRPFCFHCELRCKF 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,743,256
Number of Sequences: 28952
Number of extensions: 101103
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)