Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0488.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004996D6 Cluster: protein kinase; n=2; Entamoeba h...    36   0.51 
UniRef50_A5DZJ3 Cluster: Putative uncharacterized protein; n=1; ...    34   1.5  
UniRef50_A5KZR0 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  

>UniRef50_UPI00004996D6 Cluster: protein kinase; n=2; Entamoeba
           histolytica HM-1:IMSS|Rep: protein kinase - Entamoeba
           histolytica HM-1:IMSS
          Length = 1726

 Score = 35.9 bits (79), Expect = 0.51
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 140 CILGTIYSILKTCVFEKLSTDAYLGNSILLTYIVEQSLIKNNSEYK 3
           CI+    +I +T VFEK  T+ YLGN I++    E+       EYK
Sbjct: 542 CIINITRTIEETVVFEKTETEVYLGNDIIILNEYEECTNLIFDEYK 587


>UniRef50_A5DZJ3 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 793

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = +2

Query: 17  YSLLNFVQQYMLIK*NFLNKH-LSTTFRTRM--SSKLNKLFPKYIFPFILEIINQ*NN-K 184
           + LLNF     +IK +FLN + L+ T  T +   + +  +  +YI P + EI N  NN  
Sbjct: 11  FILLNFTLFIQIIKVSFLNSNKLTATISTSLLVIASVYYISTQYIIPKLTEITNNNNNPN 70

Query: 185 HSANTN*XXINIL 223
           +S N+N    NIL
Sbjct: 71  NSDNSNYQSNNIL 83


>UniRef50_A5KZR0 Cluster: Putative uncharacterized protein; n=1;
           Vibrionales bacterium SWAT-3|Rep: Putative
           uncharacterized protein - Vibrionales bacterium SWAT-3
          Length = 366

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 270 KTICYNIIQYSXLCDFNILIXX*FVFALCLLFY 172
           K+ICY+  Q S L  FN      ++ +LC LFY
Sbjct: 99  KSICYSKDQVSTLAKFNFYNSSVYIISLCFLFY 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 328,112,919
Number of Sequences: 1657284
Number of extensions: 5025527
Number of successful extensions: 8761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8760
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)