Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0488.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38116| Best HMM Match : APC8 (HMM E-Value=3.3)                      27   6.5  
SB_12074| Best HMM Match : APC8 (HMM E-Value=0.7)                      27   6.5  
SB_7128| Best HMM Match : Usp (HMM E-Value=8.3)                        27   6.5  

>SB_38116| Best HMM Match : APC8 (HMM E-Value=3.3)
          Length = 326

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 77  HLSTTFRTRMSSKLNKLFPKYIFPFILE---IINQ*NNKHSAN 196
           HL  T RT M ++ ++ FP+    FI++   ++N   NK + +
Sbjct: 94  HLGVTARTHMIAEFHRSFPENTNEFIIDQRYVVNHEENKETGD 136


>SB_12074| Best HMM Match : APC8 (HMM E-Value=0.7)
          Length = 326

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 77  HLSTTFRTRMSSKLNKLFPKYIFPFILE---IINQ*NNKHSAN 196
           HL  T RT M ++ ++ FP+    FI++   ++N   NK + +
Sbjct: 94  HLGVTARTHMIAEFHRSFPENTNEFIIDQRYVVNHEENKETGD 136


>SB_7128| Best HMM Match : Usp (HMM E-Value=8.3)
          Length = 278

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 75  SICRQLFEHACLQN*INCSQNTYF 146
           S+   +F H  L N  NC  NTYF
Sbjct: 231 SMIEAVFSHLYLNNLANCRSNTYF 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,052,277
Number of Sequences: 59808
Number of extensions: 147380
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)