Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0488.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54160.1 68416.m05987 syntaxin-related family protein contain...    27   9.3  
At3g45800.1 68416.m04957 hypothetical protein                          27   9.3  

>At3g54160.1 68416.m05987 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to At1g48390, At1g47920
           (syntaxin SYP81), At5g41830, At3g44180,At1g56610,
           At3g58890, At1g48390,  At3g59270 [Arabidopsis thaliana]
          Length = 434

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 275 HYCLLNNLMKCLEIYXFXXRCSXLILK 355
           HY   N +  CLE+Y F   C   +LK
Sbjct: 339 HYGDENTVCDCLEVYSFLSSCHIEVLK 365


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 5   CIXNYSLLNFVQQYMLIK*NFLNKHLSTTFRTRMSSKLNKLFPKYIFPFILEIIN 169
           CI  Y  L     Y+    N ++ HL+ T   ++  +  + F KY F F L + N
Sbjct: 132 CIYKYMSLEETVTYLEDNHN-ISHHLTITIWEQLQKESPEFFKKYYFHFSLMVEN 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,121,223
Number of Sequences: 28952
Number of extensions: 103314
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)