Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0487.Seq
         (469 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56B43 Cluster: PREDICTED: similar to CG6222-PA;...    36   0.58 
UniRef50_A0DCL6 Cluster: Chromosome undetermined scaffold_45, wh...    33   2.4  

>UniRef50_UPI0000D56B43 Cluster: PREDICTED: similar to CG6222-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG6222-PA - Tribolium castaneum
          Length = 962

 Score = 35.5 bits (78), Expect = 0.58
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = -1

Query: 109 DDFASNIEKAIRKAMNKNEAEDDQSRLDEDRRRYKK 2
           DDFA NIEKAI   + K++   D+ + DED+R  K+
Sbjct: 123 DDFAINIEKAIASVLKKDKHVSDEEK-DEDKRGRKR 157


>UniRef50_A0DCL6 Cluster: Chromosome undetermined scaffold_45, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_45,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 180

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 172 WILISFSYLILNNIDPEFQGFL*IFLQAR*IF--IDNINILSFSTFLISTFNLSIFK 336
           W ++S SY +L +    FQG L +FL+ +     + NIN+  F ++L+ +    +FK
Sbjct: 123 WGVLSISYYVLYSFS--FQGMLDLFLREQRFSDSVPNINVFDFHSYLVCSDTKQLFK 177


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,226,056
Number of Sequences: 1657284
Number of extensions: 3603688
Number of successful extensions: 10395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10383
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)