Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0487.Seq
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0384 - 7972067-7972162,7972776-7972985,7973083-7973286,797...    28   3.3  
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760...    27   5.7  
12_01_0079 + 644754-645932,645966-646061,646193-647122                 27   10.0 
11_01_0078 + 609005-610183,610217-610312,610444-611373                 27   10.0 

>03_02_0384 -
           7972067-7972162,7972776-7972985,7973083-7973286,
           7973381-7973497,7973692-7973810,7974001-7974341,
           7974492-7974646,7974948-7975109,7975262-7975321
          Length = 487

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 91  IEKAIRKAMNKNEAEDDQSRLDED 20
           ++K +R+A  +NE++DD    DED
Sbjct: 297 LKKLLRRAAGQNESDDDDEDTDED 320


>06_03_1190 -
           28274801-28275163,28275662-28275853,28275965-28276088,
           28276177-28276320,28276524-28276640,28277189-28277308,
           28277433-28277521,28277609-28277685,28278250-28278322,
           28278578-28279012,28280247-28280442,28281270-28281490,
           28281591-28281703,28282552-28283146,28283236-28283418,
           28283548-28283712,28283808-28284029
          Length = 1142

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 130 CDSFCFYP*TYDL--CWILIS 186
           C+SF  YP TYDL   W+L S
Sbjct: 501 CESFSTYPRTYDLVHAWLLFS 521


>12_01_0079 + 644754-645932,645966-646061,646193-647122
          Length = 734

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 97  SNIEKAIRKAMNKNEAEDDQSRLDEDRRRYKK 2
           S +EKA RKA  K  A  ++  L+E+ R+ ++
Sbjct: 209 SRVEKAKRKAEEKRLARLEKEMLEEEERKQRE 240


>11_01_0078 + 609005-610183,610217-610312,610444-611373
          Length = 734

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 97  SNIEKAIRKAMNKNEAEDDQSRLDEDRRRYKK 2
           S +EKA RKA  K  A  ++  L+E+ R+ ++
Sbjct: 209 SRVEKAKRKAEEKRLARLEKEMLEEEERKQRE 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,551,224
Number of Sequences: 37544
Number of extensions: 86247
Number of successful extensions: 233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)