Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0487.Seq
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57568| Best HMM Match : PqiA (HMM E-Value=0.3)                      29   1.9  
SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)           28   4.4  
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_57568| Best HMM Match : PqiA (HMM E-Value=0.3)
          Length = 266

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 169 CWILIS---FSYLILNNIDPEFQGFL*IFLQAR*IFIDNINILSFSTFLISTF 318
           C +LIS   F Y+I   + PEF G + I      +F   + +L F   L++ F
Sbjct: 32  CLVLISSPMFLYMISRTLGPEFGGAIGIIFFFANVFASALYVLGFVEALLNNF 84


>SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 118 PVEDDFASNIEKAIRKAMNKNEAEDDQSRLDE--DRR 14
           P EDD  +N+E A R  M+  +  DD S LDE  DRR
Sbjct: 110 PKEDDDKNNVEVARRCKMSALQIRDDDS-LDELLDRR 145


>SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)
          Length = 525

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 88  EKAIRKAMNKNEAEDDQSRLDEDRRRYKK 2
           E  IRK + +   E+ + + +EDRRRY++
Sbjct: 378 ELEIRKELERKREEERRRQKEEDRRRYEE 406


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -1

Query: 118  PVEDDFASNIEKAIRKAMNKNEAEDDQSRLDED 20
            P E+DF  ++E  + +    N+++D +  +D+D
Sbjct: 962  PTEEDFNMDVEMEVDETNKDNQSKDMEMDMDDD 994


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,156,254
Number of Sequences: 59808
Number of extensions: 118168
Number of successful extensions: 332
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)