Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0487.Seq
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily ass...    28   3.8  
U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily ass...    28   3.8  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform a protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 160 YDLCWILISFSYLILNNIDPEFQGF 234
           + LCW  +  +YL+LN + PE  G+
Sbjct: 280 FSLCWFPLE-TYLLLNELKPEINGW 303


>U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform b protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 160 YDLCWILISFSYLILNNIDPEFQGF 234
           + LCW  +  +YL+LN + PE  G+
Sbjct: 271 FSLCWFPLE-TYLLLNELKPEINGW 294


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 450 KKYS*TVQSSVIFEVKSFXSLNYSENFI 367
           KKY   + + ++F++ +F SL Y   F+
Sbjct: 147 KKYKLEILTVIVFDINNFLSLKYFNRFV 174


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
          protein T09E8.2 protein.
          Length = 954

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 82 AIRKAMNKNEAEDDQSRLDEDRRR 11
          A R + +KN AEDD+  +DE RR+
Sbjct: 2  AKRPSTSKNPAEDDELIIDECRRK 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,456,483
Number of Sequences: 27780
Number of extensions: 95494
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)