Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0487.Seq
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   1.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.6  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   6.6  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   6.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.7  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 53  FIFIHSLSNCFLDITSKVILYRTTIPAILFAFI 151
           FI++H  +   LD+   V ++ T +  +L  FI
Sbjct: 136 FIYVHPSATFSLDLNKVVSVFYTAVIPMLNPFI 168


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 109 DDFASNIEKAIRKAMNKNE 53
           DD  SN  + IR   N N+
Sbjct: 26  DDLLSNYNRLIRPVSNNND 44


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 109 DDFASNIEKAIRKAMNKNEAEDD 41
           DDF  ++ + I + ++K   ED+
Sbjct: 86  DDFTEDVHEIIEQCVSKAADEDE 108


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 109 DDFASNIEKAIRKAMNKNEAEDD 41
           DDF  ++ + I + ++K   ED+
Sbjct: 86  DDFTEDVHEIIEQCVSKAADEDE 108


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 187 FSYLILNNIDPEFQGFL*IFL 249
           F+Y I  N D E +G + IFL
Sbjct: 501 FTYKININSDKETKGMMRIFL 521


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 187 FSYLILNNIDPEFQGFL*IFL 249
           F+Y I  N D E +G + IFL
Sbjct: 501 FTYKININSDKETKGMMRIFL 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,884
Number of Sequences: 438
Number of extensions: 1244
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)