Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0487.Seq
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19840.1 68418.m02357 transcription factor jumonji (jmjC) dom...    27   4.8  
At2g01100.3 68415.m00018 expressed protein                             27   6.3  
At2g01100.2 68415.m00017 expressed protein                             27   6.3  
At2g01100.1 68415.m00016 expressed protein                             27   6.3  
At3g51650.1 68416.m05664 expressed protein                             27   8.4  
At3g51640.1 68416.m05663 expressed protein                             27   8.4  
At2g42190.1 68415.m05221 expressed protein ; similar to GP|9826|...    27   8.4  

>At5g19840.1 68418.m02357 transcription factor jumonji (jmjC)
           domain-containing protein low similarity to PASS1 [Homo
           sapiens] GI:21591407; contains Pfam profile PF02373:
           jmjC domain
          Length = 505

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 432 VQSSVIFEVKSFXSLNYSENFIMAQSTTNYD 340
           +Q+    + KS  S+N+  N   A+S+T+YD
Sbjct: 156 IQTPTFLDAKSLSSINFWMNSAEARSSTHYD 186


>At2g01100.3 68415.m00018 expressed protein
          Length = 247

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 112 EDDFASNIEKAIRKAMNKNEAEDDQSRLDEDRRRYKK 2
           E D +S + +  R++ NK+         D DRR+ KK
Sbjct: 64  ESDSSSEVRRKSRRSHNKHRRHAHSDSDDSDRRKEKK 100


>At2g01100.2 68415.m00017 expressed protein
          Length = 247

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 112 EDDFASNIEKAIRKAMNKNEAEDDQSRLDEDRRRYKK 2
           E D +S + +  R++ NK+         D DRR+ KK
Sbjct: 64  ESDSSSEVRRKSRRSHNKHRRHAHSDSDDSDRRKEKK 100


>At2g01100.1 68415.m00016 expressed protein
          Length = 247

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 112 EDDFASNIEKAIRKAMNKNEAEDDQSRLDEDRRRYKK 2
           E D +S + +  R++ NK+         D DRR+ KK
Sbjct: 64  ESDSSSEVRRKSRRSHNKHRRHAHSDSDDSDRRKEKK 100


>At3g51650.1 68416.m05664 expressed protein
          Length = 826

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 97  SNIEKAIRKAMNKNEAEDDQSRLDEDRRRYKK 2
           S +EKA RKA  K +A  ++   +E+ R+ ++
Sbjct: 250 SRVEKARRKAEEKRQARLEKEHSEEEERKQRE 281


>At3g51640.1 68416.m05663 expressed protein
          Length = 826

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 97  SNIEKAIRKAMNKNEAEDDQSRLDEDRRRYKK 2
           S +EKA RKA  K +A  ++   +E+ R+ ++
Sbjct: 250 SRVEKARRKAEEKRQARLEKEHSEEEERKQRE 281


>At2g42190.1 68415.m05221 expressed protein ; similar to
           GP|9826|X07453
          Length = 141

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 118 PVEDDFASNIEKAIRKAMNKNEAEDDQSRLDE 23
           P++DDF    E+   + + K E ED+   +D+
Sbjct: 39  PMKDDFEEEEEEDDEEMVEKMEVEDEDEEIDD 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,818,365
Number of Sequences: 28952
Number of extensions: 81314
Number of successful extensions: 267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)