Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0486.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0619 + 26652923-26653267,26653440-26654273                       27   4.1  
12_01_0720 + 6347765-6347839,6347936-6348004,6348221-6348256,634...    26   9.5  
03_02_0101 - 5623661-5623669,5623756-5624408,5624504-5624640,562...    26   9.5  

>04_04_0619 + 26652923-26653267,26653440-26654273
          Length = 392

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 396 FDPQSNDFEXXXL--NSDPEN--VSAAIQKAQIIVDETGTXXXVAT 271
           FDP + D     +  N+ PE   VSA  QK  + VDE GT    AT
Sbjct: 295 FDPLAADLSRMAVSVNTPPERLYVSAMRQKCAVEVDEEGTTAVEAT 340


>12_01_0720 +
           6347765-6347839,6347936-6348004,6348221-6348256,
           6348342-6348647,6348887-6348901
          Length = 166

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 351 DPENVSAAIQKAQIIVDETGTXXXVATAVVGAKRH--PQLFRRTNITS 214
           D +   A ++  +++VD + T   + T + G  RH  P+L + T ++S
Sbjct: 19  DQDFAHAVVECNRVVVDASTTIQHLGTGIAGFVRHSPPRLPQLTRVSS 66


>03_02_0101 -
           5623661-5623669,5623756-5624408,5624504-5624640,
           5626032-5626609
          Length = 458

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 21  CYXTPHKNIXIYSKLIQ**KFSSNKXX*LKEXIF 122
           C   PH N+ ++S L+Q  K  +NK   ++E +F
Sbjct: 259 CIIMPH-NVFLHSALVQSRKIDTNKKSRVQEAVF 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,760,542
Number of Sequences: 37544
Number of extensions: 88033
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)