Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0486.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    27   4.6  
At1g64010.1 68414.m07250 serpin, putative / serine protease inhi...    27   6.1  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 20/43 (46%), Positives = 22/43 (51%)
 Frame = -1

Query: 357 NSDPENVSAAIQKAQIIVDETGTXXXVATAVVGAKRHPQLFRR 229
           N D  +VS+ I KA I VDE GT    A AV  A   PQ   R
Sbjct: 316 NGDKLHVSSIIHKACIEVDEEGTE---AAAVSVAIMMPQCLMR 355


>At1g64010.1 68414.m07250 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 185

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 333 AAIQKAQIIVDETGTXXXVATAVVG 259
           A  QKA + +DE G     ATAVVG
Sbjct: 118 ALYQKACVEIDEEGAEAIAATAVVG 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,802,386
Number of Sequences: 28952
Number of extensions: 78142
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)