Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0485.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       28   0.054
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    26   0.16 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.50 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.66 
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    21   8.1  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 0.054
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 48  FGSQPMHRRR*RIYYWSSVHCTPRLYRNSCVPSHCSLTDSYPYRSKI-QLLYFQIHDFSC 224
           FG+  ++    R YYW +++ T +    SC     + + + P++  +  +LY  I D  C
Sbjct: 143 FGATKVYNSMKREYYWPNMYRTIKKRLRSCDLCQKTKSSNRPHQGPLTPILYDHIGDLVC 202


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 12/60 (20%), Positives = 29/60 (48%)
 Frame = -2

Query: 246 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGD 67
           EREK  S+ ++ E + +E      +DK +  + G +     K E+  ++ +  + + + +
Sbjct: 218 EREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDE 277


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 232 GFFPFDCEPLFEPSRLPVFVSDDLLVPVS 318
           GFFP D   +F  ++L +F    +++ VS
Sbjct: 699 GFFPIDYSLVFSETKLLLFKITSVMIAVS 727


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 171 DKNRSVNSGSERKSSGKDEEYSEQNSSNK-SFNDGDASADYQTKSKKVE 28
           D+ RS  + +E KSS  D   SE+ S    S N   + AD+     KVE
Sbjct: 29  DEKRSSENLTEEKSSLIDLTESEEKSGGSYSSNKNVSRADHSPVFGKVE 77


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 86  NPLTTAMHRLTTKPNLRRLKRILPEIKK 3
           N     M R    P+   LKR+LP+  K
Sbjct: 40  NYFNCIMDRGACTPDADELKRVLPDALK 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,742
Number of Sequences: 336
Number of extensions: 1267
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)