Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0483.Seq
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    25   0.41 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   2.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   2.9  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   3.8  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    22   3.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   5.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.1  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 429 LTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 337
           L +EKE  K   D    EE+  E  ED D D
Sbjct: 213 LVVEKEREKELSDDEAEEEKKEEEGEDKDKD 243


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 323 KVPNTKNTVKRKSMKNVGPTTSSHWQER 240
           K+PNTKN V+RK+    G TT++  + R
Sbjct: 293 KLPNTKN-VRRKT-NPAGVTTTTKGKVR 318


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 323 KVPNTKNTVKRKSMKNVGPTTSSHWQER 240
           K+PNTKN V+RK+    G TT++  + R
Sbjct: 293 KLPNTKN-VRRKT-NPAGVTTTTKGKVR 318


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 205 ERKEVEGEYEKDYE 164
           E+ + EGEY K YE
Sbjct: 106 EKYDKEGEYRKKYE 119


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 465 KEIKISISKAEGLTLEKEGYKSDYDRNEYEERGSEHQEDND 343
           ++ K  +S     TL  E   +DYD +E   R    + +ND
Sbjct: 95  EKAKRDLSSVHKTTLTIENLLADYDFSETLTRAKFEELNND 135


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 486 KXELTKDKEIKISISKAEGLTLEKEGYKSDYDRNEYEER 370
           + E++ +K    S   +E    E  G KSD D  EY+E+
Sbjct: 149 RLEMSLEKSGLFSSKTSEHSVDELSG-KSDNDAEEYDEQ 186


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 317  PNTKNTVKRKSMKNVGPTTSSHWQER 240
            P+T +  K        P+T++HWQ +
Sbjct: 1161 PSTSSWQKPTKPSYRPPSTTNHWQTK 1186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,169
Number of Sequences: 336
Number of extensions: 1242
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)