Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0483.Seq
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 27 2.3
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 26 3.0
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 3.0
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 4.0
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 7.0
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.0
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.2
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 9.2
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 9.2
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 9.2
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 259 VLIGKNGISAERTKSKRGERKEVEGEYEK 173
V I K+G+ E T ++ R+++E EYE+
Sbjct: 517 VNITKDGLELEETDEEKAAREKLEKEYEE 545
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -1
Query: 225 ERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQK 94
++ ++E KEKK+ ++ + GK+ +P + E+ K+ K
Sbjct: 206 DKLKKEEKEKKTAVDVSDSVNGKKRKTEPAGEGEQTEKKSKSTK 249
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 225 ERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 76
ER Q+EV+E K+K N + KRT + E + ++KK SS
Sbjct: 41 ERRQKEVEEAKAKQNDKLLDLRKRTFTN----HLENNELADDEKKSQVSS 86
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 4.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = -1
Query: 216 QREVKEKKSKANMRKTTKGKRTTADPPNIQREKE-----RVWKNQKKGTASSRLSPSR 58
+R+ KEKK ++ K K A QR +E R K KKG A + PS+
Sbjct: 174 RRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSKKGKAPKKKKPSK 231
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 204 KEKKSKANMRKTTKGKRTTADPPNIQREKE 115
K+K + N +K KGK T + P ++E
Sbjct: 518 KDKDASRNNKKNKKGKHTQIEDPTAASKEE 547
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 198 KKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 76
K+ K N+ T G T N +EK R WK + + +S
Sbjct: 160 KERKINIELTAGGGGKTEARMNKIKEKNRKWKEEMRQRVAS 200
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 147 ADPPNIQREKERVWKNQKKGTASSRLSPSRWVNP 46
A P I+++ R+W + K+G S L R ++P
Sbjct: 177 AAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSP 210
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 9.2
Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 1/144 (0%)
Frame = -1
Query: 522 KKXTNEXRRKI*KXELTKDKEIKISISKAEGLTLE-KEGYKSDYDRNEYEERGSEHQEDN 346
KK + + K+ K E + +E + +A LE K ++ R E + + ++
Sbjct: 596 KKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQ 655
Query: 345 DSDXXXXXXXXXXXXXXXXXXXERRTHDKFSLARTXLVPSERNQREVKEKKSKANMRKTT 166
+ + +++ D+ +AR + E +R ++E+K + + K
Sbjct: 656 ELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEE 715
Query: 165 KGKRTTADPPNIQREKERVWKNQK 94
+ +R EKER + K
Sbjct: 716 EERRRRELLEKESEEKERRLREAK 739
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 499 AKDLKXRAHERQRNKDIHLESRRIDFRKRRIQ 404
A+ LK RAH+R + LES + D + R++Q
Sbjct: 350 AQKLKKRAHDRLATAERRLESAKED-QARKLQ 380
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 453 ISISKAEGLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 337
+ + EG L EG + DY +N +R + D+D+D
Sbjct: 61 LDVEDEEGEDLFGEGMERDYQQNLELDRYDIEELDDDND 99
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 9.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 204 KEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 73
KEKKSK +K K K +AD I ++ + K KKG + ++
Sbjct: 71 KEKKSKHEHKKHKKDK-PSADKDRISKKDK---KKSKKGKSKTK 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,807
Number of Sequences: 5004
Number of extensions: 22095
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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