Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0483.Seq
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665... 29 1.7
02_04_0461 - 23125260-23125868 29 1.7
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 3.1
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 28 4.0
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 28 4.0
03_06_0713 - 35687672-35689219 28 5.3
09_06_0080 + 20736778-20737005,20737104-20737482,20737572-207376... 27 7.1
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074... 27 7.1
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 27 9.3
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 27 9.3
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249... 27 9.3
>11_04_0071 - 13165019-13165082,13165345-13165428,13166325-13166524,
13166756-13170655
Length = 1415
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 109 NSLFLSL-NIRRIRRCSLSFRSLSHIRLRLLFFH 207
N F+SL N IR CS++ + LSH+ L+L F H
Sbjct: 1034 NFSFMSLLNKLVIRACSITGKQLSHLILQLPFLH 1067
>02_04_0461 - 23125260-23125868
Length = 202
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 228 SERNQREVKEKKSKAN-MRKTTKGKRTTADPPNIQREKERVWKNQKK 91
++R QRE +EK+ K N +R TK +R T +P IQ+ + + Q K
Sbjct: 132 AKRKQREEREKRKKENVLRSGTKLQRVT-NPKTIQKIAKSKKRKQLK 177
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 423 LEKEGYKSDYDRNEYEERGSEHQEDND 343
+E + YKSD D N YE+ E+ +D+D
Sbjct: 676 IEGQDYKSD-DENAYEDDDEEYDDDDD 701
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 231 PSERNQREVKEKKSKANMRKTTKGKRTTADPPNI 130
PS+ E +KK K + K KG DPP+I
Sbjct: 164 PSQDGGSEAAKKKKKKSKSKKKKGPLQQTDPPSI 197
>12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -1
Query: 192 SKANMRKTTKGKR---TTADPPNIQREKERVWKNQKKG 88
SKA+ RK KG+ +T+D PN + K+ V Q+KG
Sbjct: 887 SKADRRKLKKGQNVGDSTSDSPNGEAAKKPVNSQQEKG 924
>03_06_0713 - 35687672-35689219
Length = 515
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 279 LHTFPLHRIFRIRNLCCMSRRCRYPPGVQIRVLHIH 386
LH P + R+R L +S RY P + R+LH+H
Sbjct: 83 LHPSPRRNLARLRRLLSVSLLRRY-PALARRLLHLH 117
>09_06_0080 +
20736778-20737005,20737104-20737482,20737572-20737615,
20738491-20738612,20738701-20738809,20738933-20739046
Length = 331
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 438 AEGLTLEKEGYKSDYDRNEYE-ERGSEHQEDNDS 340
AEG E+EG+ +YD E E E ED+++
Sbjct: 144 AEGSEFEEEGFDEEYDEEEVEPELDPAEYEDDEA 177
>07_03_0631 +
20104332-20106802,20106904-20107030,20107352-20107479,
20108771-20109083
Length = 1012
Score = 27.5 bits (58), Expect = 7.1
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 222 VRSALXPFLPMRTCRGSYVLHTF-PLHRIFRIRNLCCMSRRCRYPPGVQIRVLHIHY-DR 395
VRS L F RT + L++ P+ R+ +L C+ + PP V H+ Y D
Sbjct: 525 VRSILF-FDGQRTTMLNTALNSILPVSSSLRVLDLSCIETKMERPPDVISTCSHLRYLDL 583
Query: 396 NQTCILLFLKSILRL 440
+ T I +F S +L
Sbjct: 584 SFTGITMFPDSFCKL 598
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 237 LVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK--GTASSRLSP 64
L E+ +RE +E++ + ++ K R ++EKE++ K GT+SS LS
Sbjct: 512 LEEEEKEKREEEERRERRRTKEREKKLRRKERLKEKEKEKEKIPVQLKPYIGTSSSPLSN 571
Query: 63 S 61
S
Sbjct: 572 S 572
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 234 VPSERNQREVKEKKSKANMRKTTKGKRTTAD 142
+P + N +A RKT KGKR AD
Sbjct: 699 LPDQENNTGSSSSSRRAKGRKTDKGKRVRAD 729
>03_06_0617 -
35124114-35124148,35124243-35124335,35124415-35124919,
35125039-35125238,35125514-35125604,35125699-35126769
Length = 664
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -1
Query: 222 RNQREVKEKKSKANMRKT-TKG-KRTTADPPNIQREKERVWKNQKKGTASSRLSPSR 58
R +++ + K + N+ K ++G KRT+ D + +K+++ KN+ K ++ + S+
Sbjct: 545 RGKQKGRRKSREKNINKEPSRGTKRTSGDSTIEESQKQKLQKNKSKASSGGQKKTSK 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,695,818
Number of Sequences: 37544
Number of extensions: 134021
Number of successful extensions: 676
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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