Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0483.Seq
         (528 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   0.68 
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    24   2.7  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   3.6  
AY578804-1|AAT07309.1|  133|Anopheles gambiae maverick protein.        23   8.4  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 26.2 bits (55), Expect = 0.68
 Identities = 16/54 (29%), Positives = 20/54 (37%)
 Frame = -1

Query: 276 RRTHDKFSLARTXLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE 115
           R   D +  A+  L   E+   EVK K S  N          T D P+    KE
Sbjct: 751 RLLEDAYQSAKKTLANVEKKLAEVKAKSSDKNSTARALCANKTPDKPDFPYRKE 804


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 323  KVPNTKNTVKRKSMKNVGPTT 261
            K PNT   + ++S+KN  P T
Sbjct: 1699 KAPNTATDIMQRSLKNKCPNT 1719


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 225 ERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKER 112
           E  +R+ +EK+ +   ++  + +R  A     +RE+ER
Sbjct: 496 EERERQQREKEQREREQREKEREREAARERERERERER 533


>AY578804-1|AAT07309.1|  133|Anopheles gambiae maverick protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 147 ADPPNIQREKERVWKNQK 94
           ADP N QR K   W N +
Sbjct: 109 ADPKNPQRLKVSTWHNMR 126


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 332,271
Number of Sequences: 2352
Number of extensions: 4951
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48628785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)