Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0481.Seq
         (429 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    28   0.043
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.40 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.70 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   3.8  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   3.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   3.8  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   5.0  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   5.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   8.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   8.7  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 0.043
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 149 SLPPHQAFPSPADRPPVIPTTXSARDRPPPVSQP 250
           +LPP +  PSP    P++    S     PP   P
Sbjct: 70  ALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSP 103


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.40
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 164 QAFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGN 298
           Q  PSP+  P  +PT  ++   P   S+ +  + S + T ++ G+
Sbjct: 72  QGAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTASYGS 116


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 166  LVWWKGVSSYSGRCGCKVQSVVTKLFRNEL 77
            +VW   +  +  RCGC    ++ K   NEL
Sbjct: 2659 MVWALDLDDFKNRCGCGKHPLL-KTLNNEL 2687


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 53  HDHRFRMEQLVSEQFRHHGL 112
           H HRFR++  +S   RH  L
Sbjct: 101 HPHRFRLKFNISSIPRHEKL 120


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 166 LVWWKGVSSYSGRCGCKV 113
           ++W   V+ Y+G   CKV
Sbjct: 82  IIWKTTVAWYAGNVACKV 99


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
 Frame = +2

Query: 149 SLPPHQAFPSPADRPPVIPTTXSARDRPPPVSQ-----------PLYLNPSWIFTRSA 289
           ++P ++  PS  D  P +P T    +  PP+ Q           P  +NPS I   +A
Sbjct: 147 TMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINPSAICESAA 204


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 12  RLFLQLHYLHDRITMTIALEWNNSFRNNF 98
           ++FL  H L     + +ALE NN+    F
Sbjct: 160 KVFLVEHILVQTNKLVLALECNNTTAEGF 188


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 12  RLFLQLHYLHDRITMTIALEWNNSFRNNF 98
           ++FL  H L     + +ALE NN+    F
Sbjct: 160 KVFLVEHILVQTNKLVLALECNNTTAEGF 188


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 11/42 (26%), Positives = 14/42 (33%)
 Frame = +2

Query: 179 PADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWP 304
           P + P  +  +   R     VSQP    P   F       WP
Sbjct: 237 PGNGPLDLSVSSRKRSNDDSVSQPPNRKPRTDFKPQVLPQWP 278


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 233 PPVSQPLYLNPSWIFTRSA 289
           PP+  P  +NPS I   +A
Sbjct: 186 PPIFAPTMINPSAICESAA 204


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,843
Number of Sequences: 336
Number of extensions: 1538
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)