Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0481.Seq
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 30 0.13
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 0.93
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 1.6
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 27 1.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 1.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 5.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 8.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 8.7
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 30.3 bits (65), Expect = 0.13
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 146 NSLPP-HQAFPSPADRPPVIPTTXSARDRPPP 238
N +PP QA+ P PP +P ++ + PPP
Sbjct: 96 NPMPPMSQAYRPPPTEPPTVPAYETSSEFPPP 127
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 0.93
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 173 PSPADRPPVIPTTXSARDRPPPVSQPLYLNPS 268
P P PPV ++ A PPPV P PS
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPS 1075
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 173 PSPADRPPVIPTTXSARDRPPPVSQPLYLNPS 268
P P++ PPV + PPP + P PS
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 149 SLPPHQAFPSPADRPPVIPTTXSARDRPPPVSQP 250
SL P + P+ PP IPT + PPV++P
Sbjct: 360 SLTPLSSRPAHTSLPP-IPTVQTTSSNVPPVNRP 392
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 1.6
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Frame = +2
Query: 14 SVPPAPLFARPNHHDHRFRME--QLVSEQFRHHGLNLXXXXXXXXXNSLPPHQAFPSPAD 187
S P P + P+ R E Q VS+ F N PP+ A PA
Sbjct: 162 STPAVPYYGAPDQQQMGQRPEFAQNVSQGFAGQAPYNVRPGYGMPSNQKPPNFAPGMPAP 221
Query: 188 RPPVIPTTXSARDRPP 235
P + + S + PP
Sbjct: 222 GPTAVSASPSLQSMPP 237
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 149 SLPPHQAFPSPADRPPVIPTTXSARDRPPPVSQPLYLNP 265
SLP P +PPVIP + P + P++ +P
Sbjct: 169 SLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNHP 207
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Frame = +2
Query: 146 NSLPPHQAFPSPADRPPVIPTTXSA------RDRPPPVSQPLYLNPS 268
+SLPP +P PP P+ SA + PPP+SQ N S
Sbjct: 169 SSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTS 215
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +2
Query: 149 SLPPHQAFP--SPADRPPVIPTTXSARDRPPPVSQP 250
S PP + P SPA PP+ PP +QP
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 146 NSLPPHQAFPSPADRPPVIPTTXSARDRP--PPVSQP 250
++ PP + P+P P +P SA P PP + P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 24.6 bits (51), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 155 PPHQAFPSPADRPPVIPTTXSARDRPPPVSQ-PLYLNP 265
PP + P P PP+ SA P P S P NP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 155 PPHQAFPSPADRPPVIPTTXSARDRPPPVSQP 250
PP P+PA P +P PPP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +2
Query: 146 NSLPPHQAFPSPADRPPVIP-----TTXSARDRPPPVSQPLYLNPS 268
+S PP + A PP IP T S + PP P+ +NP+
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPA 283
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 149 SLPPHQAFPSPADRPPVIPTTXSARDRPPP 238
S+PP +P P V PT+ S+ PPP
Sbjct: 290 SIPPTGNSTTPVT-PTVPPTSTSSTSTPPP 318
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 149 SLPPHQAFPSPADRPPVIPTTXSARDRPPP 238
S+PP +P P V PT+ S+ PPP
Sbjct: 344 SIPPTGNSTTPVT-PTVPPTSTSSTSTPPP 372
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,491
Number of Sequences: 5004
Number of extensions: 21624
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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