Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0481.Seq
(429 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 36 0.019
SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4) 32 0.18
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 31 0.31
SB_45142| Best HMM Match : Herpes_IE68 (HMM E-Value=3.8) 31 0.31
SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7) 31 0.31
SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7) 31 0.31
SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7) 31 0.31
SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7) 31 0.31
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05) 31 0.31
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 31 0.41
SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 31 0.54
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19) 29 1.6
SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 2.2
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40) 28 2.9
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8) 28 2.9
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_38056| Best HMM Match : OAD_gamma (HMM E-Value=8) 28 3.8
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 28 3.8
SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 28 3.8
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 28 3.8
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_9848| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 5.0
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06) 27 5.0
SB_19920| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 27 5.0
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 27 6.6
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_33575| Best HMM Match : PAN (HMM E-Value=0.00074) 27 8.7
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 35.5 bits (78), Expect = 0.019
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +2
Query: 146 NSLPPHQAFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSAC--GNWPVRPVQ 319
N+ PP AD PPV PTT + PP P PS F A N P PV
Sbjct: 430 NNPPPRPYASQFADAPPVSPTTATPPPPPPSQPPPQQFIPSPQFPEQALQFTNQPAAPVM 489
Query: 320 GRP 328
P
Sbjct: 490 NAP 492
>SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4)
Length = 246
Score = 32.3 bits (70), Expect = 0.18
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 152 LPPHQAFPSPADRPPVIPTTXSARDRPPPVSQPL 253
LPP + P + PP P+T S+ PPP S PL
Sbjct: 157 LPPPSSSPPLSSPPPPPPSTPSSSLLPPPSSSPL 190
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 31.5 bits (68), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + G+ PV P +
Sbjct: 824 PDHQFRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHGSHPVIPTE 878
>SB_45142| Best HMM Match : Herpes_IE68 (HMM E-Value=3.8)
Length = 292
Score = 31.5 bits (68), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + G+ PV P +
Sbjct: 210 PDHQYRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHGSHPVIPTE 264
>SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 31.5 bits (68), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + G+ PV P +
Sbjct: 112 PDHQFRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHGSHPVIPTE 166
>SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 214
Score = 31.5 bits (68), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + G+ PV P +
Sbjct: 86 PDHQYRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHGSHPVIPTE 140
>SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 31.5 bits (68), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + G+ PV P +
Sbjct: 112 PDHQYRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHGSHPVIPTE 166
>SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 31.5 bits (68), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + G+ PV P +
Sbjct: 112 PDHQYRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHGSHPVIPTE 166
>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
Length = 848
Score = 31.5 bits (68), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + G+ PV P +
Sbjct: 720 PDHQYRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHGSHPVIPTE 774
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 31.1 bits (67), Expect = 0.41
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + G+ PV P +
Sbjct: 1085 PDHQYRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-LTTQLSHGSHPVIPTE 1139
>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 287
Score = 30.7 bits (66), Expect = 0.54
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + G+ PV P +
Sbjct: 159 PDHQYRTPPPPPRSPERQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHGSHPVIPTE 213
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 152 LPPHQAFPSPADRPPVIPTTXSARDRPPPVSQPL 253
L P Q +P RP PT SA+ P P+ +PL
Sbjct: 628 LSPRQTLSAPPSRPKTAPT--SAQRTPEPIRKPL 659
>SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)
Length = 86
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 155 PPHQAFPSPADRPPV--IPTTXSARDRPPPVSQPLYLNP 265
PP P P PP IPT S + PPPV+QP P
Sbjct: 22 PPQPTPPKPDTPPPGTNIPTPPSP-NTPPPVTQPPVTQP 59
>SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 269
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + + PV P +
Sbjct: 141 PDHQYRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHDSHPVIPTE 195
>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
Length = 580
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3
Query: 199 YRWSIRR*RKRLVWWKGVSSYSGRCGCKVQS 107
Y W + R ++ +W G + S +C C + S
Sbjct: 487 YAWWVSRNNAKMTYWGGATPGSNKCACGMTS 517
>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
Length = 315
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 155 PPHQAFPSPADRPPVIPTTXSARDRPPPV 241
PP P +PP IP R +PPP+
Sbjct: 182 PPIPPIDPPRTQPPPIPPIDPPRTQPPPI 210
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 155 PPHQAFPSPADRPPVIPTTXSARDRPPPV 241
PP P +PP IP R +PPP+
Sbjct: 195 PPIPPIDPPRTQPPPIPPIDPPRTQPPPI 223
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 155 PPHQAFPSPADRPPVIPTTXSARDRPPPV 241
PP P +PP IP R +PPP+
Sbjct: 169 PPIFPIDPPRTQPPPIPPIDPPRTQPPPI 197
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 155 PPHQAFPSPADRPPVIPTTXSARDRPPPVSQP 250
PP Q P+PA RP + RPPP +P
Sbjct: 1105 PPRQPKPTPAPRPRSWVESQPELHRPPPPIKP 1136
>SB_38056| Best HMM Match : OAD_gamma (HMM E-Value=8)
Length = 176
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Frame = +2
Query: 176 SPADRPPVIPTTXSARDRPP------PVSQPLYLNPSWIFTRSACGNW 301
SP+ RP +P + RPP P +QP Y I+T GN+
Sbjct: 41 SPSTRPTPVPRSNPTTTRPPHVAACIPQTQPGYFKNLHIYTNLTDGNF 88
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 158 PHQAFPSPADRPPVIPTTXSARDRPPPV 241
P A P+PA PP + T SA PPP+
Sbjct: 570 PSSAVPTPATAPPPVAATLSA---PPPL 594
>SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 155 PPHQAFPSPADRPPVIPTTXSARDRPPPV 241
PP +++P P R PV+ TT R P +
Sbjct: 534 PPTRSWPEPPVRIPVVHTTIPTRSEHPKI 562
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +2
Query: 155 PPHQAFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWP 304
PP P P PP P T D P P P P+ T +C + P
Sbjct: 125 PPTGTLPPPPVTPPPGPETPPPPDTPAPPVPPTEAPPTAPPTGGSCVSKP 174
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +2
Query: 158 PHQAFPSPADRPPVI---PTTXSARDRPPPVSQPLYLNP 265
P + P P PP PTT +R +P P ++P P
Sbjct: 1093 PPRTTPEPTTEPPRTTPEPTTEPSRTKPEPTTEPSRTKP 1131
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Frame = +2
Query: 158 PHQAFPSPADRPPVI---PTTXSARDRPPPVSQPLYLNPSWIFTRSAC---GNW 301
P + P P PP PTT R P P ++P + + + R C G W
Sbjct: 1126 PSRTKPEPTTEPPRTTSEPTTEPLRTTPEPTTEPTTEHVTTVPRRRGCLYEGKW 1179
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 158 PHQAFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIF 277
PH + P IP T + PP P Y +PS+ +
Sbjct: 269 PHTSIPPTPTPHTSIPPTPTPHTSIPPTPHPTYKHPSYSY 308
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +2
Query: 158 PHQAFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
PH + P IP T + P S P Y +PS+ + ++P +Q
Sbjct: 279 PHTSIPPTPTPHTSIPPTPHPTYKHPSYSYPTYKHPSYSYPSYKHPSYPSSHIQ 332
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 155 PPHQAFPSPADRPPVIPTTXSARDRPPPVSQP 250
PP+ +P P PP P +A PPP P
Sbjct: 151 PPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPP 182
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 173 PSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQGRP 328
P P+ PP P T + PPPV P W + S PVQ P
Sbjct: 322 PPPSQAPPP-PKTIPSTLPPPPVPSATSAPPPWATSNSGPKPLMSTPVQRPP 372
>SB_9848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 155 PPHQAFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGN 298
PP + P D P I S R+ PP+ +P + P + + GN
Sbjct: 368 PPPMSEYLPVDEPAPISELPSIRE-IPPIQEPTHATPKRLDPKETFGN 414
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRPVQ 319
P HQ P P R P T ++ PP S PL NP + T+ + G+ V P +
Sbjct: 1141 PDHQYRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHGSHLVIPTE 1195
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +2
Query: 155 PPH---QAFPSPADRPPVIPTTXSARDRPPPV 241
PPH A P P PP+ PT + PPP+
Sbjct: 619 PPHLQSTAQPRPTTVPPLPPTPPPRQSTPPPL 650
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 155 PPHQ-AFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWP 304
P HQ P P R P T ++ PP S PL NP + T+ + G+ P
Sbjct: 549 PDHQYRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPH-VTTQLSHGSHP 598
>SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 152 LPPHQAFPSPADRPPVIPTTXSARDRPPPVSQ 247
+PP QA+ PA +P P PP SQ
Sbjct: 210 MPPPQAYWQPASQPSAPPLMNDPNQAPPYYSQ 241
>SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)
Length = 799
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 202 YYRWSIRR*RKRLVWWKGVSSYSGRCGCKV 113
++ W + R +++ W G S S +C C V
Sbjct: 75 WFNWWVSRDGEKMTSWGGAPSRSNKCACGV 104
>SB_19920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1035
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 202 YYRWSIRR*RKRLVWWKGVSSYSGRCGCKV 113
+Y W + R +++ W G + S +C C V
Sbjct: 740 WYNWWVSRDGQKMTSWGGAPTGSNKCACGV 769
>SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3
Query: 199 YRWSIRR*RKRLVWWKGVSSYSGRCGCKVQS 107
Y W + R ++ +W G + S +C C + S
Sbjct: 581 YAWWMSRDNAKMTYWGGATPGSNKCACGMTS 611
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 155 PPHQA--FPSPADRPPVIPTTXSARDRPPP 238
PP +A PS A PP PT+ + R PPP
Sbjct: 112 PPPRAPETPSQAPSPPPPPTSPATRAPPPP 141
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 149 SLPPHQAFPSPADRPPVIPTTXSARDRPPPVSQ 247
++PP +P PP + T RPPP+ +
Sbjct: 113 TVPPPVVTDAPTTVPPPVQPTEPPSTRPPPIGE 145
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +2
Query: 155 PPHQAFPSPADRPPV-IPTTXSA---RDRPPPVSQPLYLNP 265
PP Q P P RPP IP R PPP+ P+ + P
Sbjct: 300 PPPQYMPHPRMRPPTRIPPPGMGPPPRIPPPPIRAPVDVYP 340
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +2
Query: 158 PHQAFPSPADRPPVIPTTXSARDRPPPVSQP 250
PH FP P P +P + R PP P
Sbjct: 437 PHPRFPPPGAPHPRVPPPGAPHPRVPPPGAP 467
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +2
Query: 158 PHQAFPSPADRPPVIPTTXSARDRPPPVSQP 250
PHQ P P P +P + R PP P
Sbjct: 497 PHQRVPPPGAPHPRVPPPGAPHPRVPPPGAP 527
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +2
Query: 149 SLPPHQAFPSPADRPPVIPTTXSARDRPPPVSQPLYLNPSWIFTRSACGNWPVRP 313
S P + PS P+ P+ + +P P + P+ +PS + + P++P
Sbjct: 1281 STNPIKPSPSTTSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKP 1335
>SB_33575| Best HMM Match : PAN (HMM E-Value=0.00074)
Length = 328
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -3
Query: 202 YYRWSIRR*RKRLVWWKGVSSYSGRCGCKV 113
+Y W + R +++ W G S +C C V
Sbjct: 239 WYNWWVSRDGEKMTSWGGAPLRSNKCACGV 268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,057,170
Number of Sequences: 59808
Number of extensions: 201937
Number of successful extensions: 873
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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