Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0480.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    98   7e-22
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.6  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    25   4.8  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 97.9 bits (233), Expect = 7e-22
 Identities = 44/85 (51%), Positives = 59/85 (69%)
 Frame = -2

Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
           QRGL+G II +FE KG+ L  LKF+ PS  L+++HY +   +PF+  LV +M+S P   M
Sbjct: 16  QRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGFMASGPVCAM 75

Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
           +WEG   VKTGR MLGASNP+  +P
Sbjct: 76  IWEGKQAVKTGRLMLGASNPLDSAP 100



 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = -1

Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVYE 89
           P D  PGTI GD  I +GR + HGSDS+ESA +EI LW    E+  +    E W+YE
Sbjct: 95  PLDSAPGTIRGDYGIDLGRNVCHGSDSIESANREIKLWFQPSEIQVYDRTIEPWIYE 151


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 159 SFLADSTLSEPWMMXRPTXMQRSPXIVPGCKSL 257
           S++AD  +   ++M RPT ++RS   +PG   L
Sbjct: 352 SYVADKFIG--FIMGRPTMLKRSDASIPGSNQL 382


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 460 RKERXXTSRFEIRMAIRXASPAT-LHRFGIPAFLPWSSKVHE 338
           R E+       ++   +   PA+  HRFG PAF  W  K+ +
Sbjct: 72  RVEKLVRILCRVKEITKTVPPASGRHRFGNPAFRIWHEKLRD 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,214
Number of Sequences: 5004
Number of extensions: 30504
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)