Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0480.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 106 9e-24
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 102 1e-22
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 102 2e-22
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 98 4e-21
05_06_0118 + 25735966-25737601,25737698-25738488 28 4.8
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248... 27 8.4
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 106 bits (255), Expect = 9e-24
Identities = 48/85 (56%), Positives = 61/85 (71%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGL+G II RFEKKGF L G+KF+ QQHY DL+ +PFFPGLV+Y+ S P V M
Sbjct: 14 QRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAM 73
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
VWEG + V TGR+++GA+ P +P
Sbjct: 74 VWEGKDVVATGRRIIGATRPWEAAP 98
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/57 (45%), Positives = 34/57 (59%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVYE 89
P + PGTI D + VGR +IHGSDSV++ KKEI LW + + W W+YE
Sbjct: 93 PWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPE-GLAEWRSNLHPWIYE 148
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 102 bits (245), Expect = 1e-22
Identities = 46/85 (54%), Positives = 59/85 (69%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGLVG II RFEKKGF L GLK + L Q+HY DL +PFFPGL++Y++S P V M
Sbjct: 15 QRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGLIEYITSGPVVCM 74
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
WEG V + R+++GA+NP+ P
Sbjct: 75 AWEGNGVVASARKLIGATNPLQAEP 99
Score = 61.3 bits (142), Expect = 4e-10
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVYE 89
P +PGTI GDL + GR ++HGSDS ++ K+EI LW + E+ W W+ E
Sbjct: 94 PLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFKEGELCEWESVLTPWLVE 150
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 102 bits (244), Expect = 2e-22
Identities = 44/85 (51%), Positives = 60/85 (70%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGL+G +I RFEKKGF L +K + + ++HY DL+S+PFF GLV+Y+ S P V M
Sbjct: 16 QRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGLVEYIVSGPVVAM 75
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
VWEG V TGR+++GA+NP+ P
Sbjct: 76 VWEGKQVVSTGRKLVGATNPLAAEP 100
Score = 65.3 bits (152), Expect = 3e-11
Identities = 27/57 (47%), Positives = 36/57 (63%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVYE 89
P +PGTI GD + +GR +IHGSDSVE+A+KEI LW + + W W+YE
Sbjct: 95 PLAAEPGTIRGDFAVDIGRNVIHGSDSVENARKEIALWFPE-GIAEWRSNQHPWIYE 150
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 97.9 bits (233), Expect = 4e-21
Identities = 43/85 (50%), Positives = 58/85 (68%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGL+ I+ RFE+KGF LV +K V PS+ Q+HY DL RPFF GL ++SS P + M
Sbjct: 58 QRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFFNGLCDFLSSGPVLAM 117
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
VWEG +K GR+++GA++P P
Sbjct: 118 VWEGEGVIKYGRKLIGATDPQKSEP 142
Score = 72.9 bits (171), Expect = 1e-13
Identities = 31/56 (55%), Positives = 38/56 (67%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVY 92
P +PGTI GDL + VGR IIHGSD E+AK EIGLW +E+V +T E W+Y
Sbjct: 137 PQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKAEIGLWFEPRELVSYTSNEEKWIY 192
>05_06_0118 + 25735966-25737601,25737698-25738488
Length = 808
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 312 IPXGPQVLNSCTLLDQGRKAGMPNRCSVAGEALLMAIRISNR 437
+P ++ LL+ GRK G+ N C E L + R SNR
Sbjct: 713 VPLAVDPIDGKVLLNTGRKLGLYNPCEQTIENLHLIRRRSNR 754
>04_04_1320 -
32623378-32623949,32624035-32624451,32624548-32624895,
32625671-32625768,32625882-32626051,32627134-32627418,
32628041-32628119,32628481-32628623,32629227-32629634
Length = 839
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 397 ATLHRFGIPAFLPWSSKVHEFXTXGP 320
A L R GIPA+ WS +H GP
Sbjct: 77 AALPRLGIPAYEWWSEALHGVSYVGP 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,723
Number of Sequences: 37544
Number of extensions: 221607
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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