Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0480.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43840| Best HMM Match : NDK (HMM E-Value=0) 97 9e-21
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1) 29 2.1
SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_47586| Best HMM Match : NAD_binding_3 (HMM E-Value=2) 27 6.5
SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1) 27 6.5
SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1) 27 6.5
SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
Length = 786
Score = 96.7 bits (230), Expect = 9e-21
Identities = 47/84 (55%), Positives = 54/84 (64%)
Frame = -2
Query: 492 RGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXMV 313
RGL+G II RFEKKGF LV +KFV SE ++HY LA F+ GL KYMS P MV
Sbjct: 652 RGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHYESLAKLKFYDGLCKYMSQTPVCAMV 711
Query: 312 WEGLNXVKTGRQMLGASNPVTCSP 241
WEGL VKT R MLG ++P P
Sbjct: 712 WEGLGVVKTARVMLGETDPAKSLP 735
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/60 (66%), Positives = 45/60 (75%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGLVG II RFE+KGF LV LK V SE L++HY DLA PF+PGLVK+MSS P V M
Sbjct: 139 QRGLVGEIIKRFEQKGFKLVALKMVQESEEHLKKHYADLAHLPFYPGLVKFMSSGPVVAM 198
Score = 81.4 bits (192), Expect = 4e-16
Identities = 34/57 (59%), Positives = 41/57 (71%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVYE 89
P+ PGTI GD I +GR IIHGSD+VE+AK+EI LW D E+V WTP N W+YE
Sbjct: 730 PAKSLPGTIRGDFSIHIGRNIIHGSDAVETAKEEIALWFKDDELVDWTPCNNPWMYE 786
Score = 27.9 bits (59), Expect = 4.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 256 SDLQPGTIXGDLCIXVG 206
+D +PGTI GD C+ +G
Sbjct: 199 ADSKPGTIRGDFCVHIG 215
>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1373
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 281 RPVFTXLRPSHTIXTXGXELMYFTRPGKKGR 373
R VF + HT+ T G E +YF RP K+ R
Sbjct: 194 RAVFNTMVVLHTVLTKGEETLYFERPIKRPR 224
>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
Length = 908
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 281 RPVFTXLRPSHTIXTXGXELMYFTRPGKKGR 373
R VF + HT+ T G + +YF RP ++ R
Sbjct: 759 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 789
>SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 281 RPVFTXLRPSHTIXTXGXELMYFTRPGKKGR 373
R VF + HT+ T G + +YF RP ++ R
Sbjct: 46 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 76
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = -2
Query: 477 TIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXMVWEGLN 298
+I+ + ++ GF + K + + ++ Y + + FF LV MSS P + + +
Sbjct: 555 SIMSKIQEAGFEIAMSKEMHLTREQAEEFYSEHKDQEFFDTLVTNMSSGPMMALCLARED 614
Query: 297 XVKTGRQMLG 268
++ R MLG
Sbjct: 615 AIEGWRGMLG 624
>SB_47586| Best HMM Match : NAD_binding_3 (HMM E-Value=2)
Length = 295
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 429 KFVWPSEXLLQQHYIDLASRPFFPGLVKYMSS 334
KF S+ +L Q +DLA R FFP L+ Y S
Sbjct: 32 KFAGWSKHILDQ--LDLAKRTFFPALLTYRYS 61
>SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)
Length = 556
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 429 KFVWPSEXLLQQHYIDLASRPFFPGLVKYMSS 334
KF S+ +L Q +DLA R FFP L+ Y S
Sbjct: 133 KFAGWSKHILDQ--LDLAKRTFFPALLTYRYS 162
>SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1)
Length = 705
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 429 KFVWPSEXLLQQHYIDLASRPFFPGLVKYMSS 334
KF S+ +L Q +DLA R FFP L+ Y S
Sbjct: 243 KFAGWSKHILDQ--LDLAKRTFFPALLTYRYS 272
>SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 429 KFVWPSEXLLQQHYIDLASRPFFPGLVKY 343
KF S+ +L Q +DLA R FFP L+ Y
Sbjct: 350 KFAGWSKHILDQ--LDLAKRTFFPALLTY 376
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,689,952
Number of Sequences: 59808
Number of extensions: 254071
Number of successful extensions: 325
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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