Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0480.Seq
(499 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13107-1|CAA31500.1| 153|Drosophila melanogaster protein ( Dros... 132 3e-31
AY113576-1|AAM29581.1| 153|Drosophila melanogaster RH27794p pro... 132 3e-31
AE014297-4796|AAF57188.3| 172|Drosophila melanogaster CG2210-PA... 132 3e-31
BT001459-1|AAN71214.1| 118|Drosophila melanogaster GM19775p pro... 107 6e-24
X85331-1|CAA59680.1| 437|Drosophila melanogaster msh protein. 31 1.1
BT003254-1|AAO25011.1| 1074|Drosophila melanogaster LD25748p pro... 29 2.6
AE014298-958|AAN09188.1| 1074|Drosophila melanogaster CG4532-PE,... 29 2.6
AE014298-957|AAF46202.1| 1074|Drosophila melanogaster CG4532-PD,... 29 2.6
AE014298-956|AAN09187.1| 1074|Drosophila melanogaster CG4532-PC,... 29 2.6
AE014298-955|AAN09186.1| 1074|Drosophila melanogaster CG4532-PB,... 29 2.6
AE014298-954|AAN09185.1| 1074|Drosophila melanogaster CG4532-PA,... 29 2.6
>X13107-1|CAA31500.1| 153|Drosophila melanogaster protein (
Drosophila melanogasterawd mRNA ( abnormal wing disc ).
).
Length = 153
Score = 132 bits (319), Expect = 3e-31
Identities = 60/85 (70%), Positives = 68/85 (80%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGLVG II RFE+KGF LV LKF W S+ LL++HY DL++RPFFPGLV YM+S P V M
Sbjct: 18 QRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPM 77
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
VWEGLN VKTGRQMLGA+NP P
Sbjct: 78 VWEGLNVVKTGRQMLGATNPADSLP 102
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVYE 89
P+D PGTI GD CI VGR IIHGSD+VESA+KEI LW +KE+V WTPA + W+YE
Sbjct: 97 PADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153
>AY113576-1|AAM29581.1| 153|Drosophila melanogaster RH27794p
protein.
Length = 153
Score = 132 bits (319), Expect = 3e-31
Identities = 60/85 (70%), Positives = 68/85 (80%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGLVG II RFE+KGF LV LKF W S+ LL++HY DL++RPFFPGLV YM+S P V M
Sbjct: 18 QRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPM 77
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
VWEGLN VKTGRQMLGA+NP P
Sbjct: 78 VWEGLNVVKTGRQMLGATNPADSLP 102
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVYE 89
P+D PGTI GD CI VGR IIHGSD+VESA+KEI LW +KE+V WTPA + W+YE
Sbjct: 97 PADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153
>AE014297-4796|AAF57188.3| 172|Drosophila melanogaster CG2210-PA
protein.
Length = 172
Score = 132 bits (319), Expect = 3e-31
Identities = 60/85 (70%), Positives = 68/85 (80%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGLVG II RFE+KGF LV LKF W S+ LL++HY DL++RPFFPGLV YM+S P V M
Sbjct: 37 QRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPM 96
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
VWEGLN VKTGRQMLGA+NP P
Sbjct: 97 VWEGLNVVKTGRQMLGATNPADSLP 121
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVYE 89
P+D PGTI GD CI VGR IIHGSD+VESA+KEI LW +KE+V WTPA + W+YE
Sbjct: 116 PADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 172
>BT001459-1|AAN71214.1| 118|Drosophila melanogaster GM19775p
protein.
Length = 118
Score = 107 bits (258), Expect = 6e-24
Identities = 48/69 (69%), Positives = 56/69 (81%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGLVG II RFE+KGF LV LKF W S+ LL++HY DL++RPFFPGLV YM+S P V M
Sbjct: 17 QRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPM 76
Query: 315 VWEGLNXVK 289
VWEGLN V+
Sbjct: 77 VWEGLNVVQ 85
>X85331-1|CAA59680.1| 437|Drosophila melanogaster msh protein.
Length = 437
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 398 WRSXSDGHTNFKPTSXXPFFSKRSIMVPTRPR 493
WRS S H K TS FS S++ TRPR
Sbjct: 41 WRSASAAHHLHKTTSRLSNFSVASLLADTRPR 72
>BT003254-1|AAO25011.1| 1074|Drosophila melanogaster LD25748p protein.
Length = 1074
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 342 CTLLDQGRKAGMPNRCSVAGEALLMAIRISNRLVXXLSF 458
CT L QG N C VA A R++N + LSF
Sbjct: 921 CTSLHQGLSFLTKNHCDVASVEFSKAYRLTNTTIEPLSF 959
>AE014298-958|AAN09188.1| 1074|Drosophila melanogaster CG4532-PE,
isoform E protein.
Length = 1074
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 342 CTLLDQGRKAGMPNRCSVAGEALLMAIRISNRLVXXLSF 458
CT L QG N C VA A R++N + LSF
Sbjct: 921 CTSLHQGLSFLTKNHCDVASVEFSKAYRLTNTTIEPLSF 959
>AE014298-957|AAF46202.1| 1074|Drosophila melanogaster CG4532-PD,
isoform D protein.
Length = 1074
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 342 CTLLDQGRKAGMPNRCSVAGEALLMAIRISNRLVXXLSF 458
CT L QG N C VA A R++N + LSF
Sbjct: 921 CTSLHQGLSFLTKNHCDVASVEFSKAYRLTNTTIEPLSF 959
>AE014298-956|AAN09187.1| 1074|Drosophila melanogaster CG4532-PC,
isoform C protein.
Length = 1074
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 342 CTLLDQGRKAGMPNRCSVAGEALLMAIRISNRLVXXLSF 458
CT L QG N C VA A R++N + LSF
Sbjct: 921 CTSLHQGLSFLTKNHCDVASVEFSKAYRLTNTTIEPLSF 959
>AE014298-955|AAN09186.1| 1074|Drosophila melanogaster CG4532-PB,
isoform B protein.
Length = 1074
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 342 CTLLDQGRKAGMPNRCSVAGEALLMAIRISNRLVXXLSF 458
CT L QG N C VA A R++N + LSF
Sbjct: 921 CTSLHQGLSFLTKNHCDVASVEFSKAYRLTNTTIEPLSF 959
>AE014298-954|AAN09185.1| 1074|Drosophila melanogaster CG4532-PA,
isoform A protein.
Length = 1074
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 342 CTLLDQGRKAGMPNRCSVAGEALLMAIRISNRLVXXLSF 458
CT L QG N C VA A R++N + LSF
Sbjct: 921 CTSLHQGLSFLTKNHCDVASVEFSKAYRLTNTTIEPLSF 959
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,634,060
Number of Sequences: 53049
Number of extensions: 356002
Number of successful extensions: 453
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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