Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0480.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...   105   2e-23
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    47   7e-06

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score =  105 bits (252), Expect = 2e-23
 Identities = 48/84 (57%), Positives = 62/84 (73%)
 Frame = -2

Query: 492 RGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXMV 313
           RGLVG II RFE++G+ LV LK +  S+  L+ HY DL  +PFFP L++YMSS P V MV
Sbjct: 18  RGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSLIEYMSSGPVVAMV 77

Query: 312 WEGLNXVKTGRQMLGASNPVTCSP 241
           W+GL+ VK GR MLGA+NP+  +P
Sbjct: 78  WQGLDVVKQGRSMLGATNPLASAP 101



 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = -1

Query: 244 PGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGW-TPANEXWVYE 89
           PGTI GD CI  GR I HGSD+V+SA +EI  W   +E+  + +P    WVYE
Sbjct: 101 PGTIRGDFCIQTGRNICHGSDAVDSANREIAHWFKQEEINDYASPFINSWVYE 153


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = -2

Query: 372 RPFFPGLVKYMSSXPXVXMVWEGLNXVKTGRQMLG 268
           +PFFP L+ YMSS P V M+WEG + VK  R +LG
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEGCDVVKRARVILG 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,948,774
Number of Sequences: 27780
Number of extensions: 183144
Number of successful extensions: 263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)