Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0480.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 7   YENXSFNHRMXNINYENKTK 66
           Y N ++N+   N NY N  K
Sbjct: 333 YNNNNYNNNNYNNNYNNNCK 352


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -2

Query: 471 IXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXMVWE 307
           + R    G    G++F      ++  HY  L S+     +  Y  +   V M W+
Sbjct: 140 LVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVLDVVMYWK 194


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 420 WPSEXLLQQHYIDLASRPFFP 358
           W S+   +   ID+ SR FFP
Sbjct: 404 WLSKFPTRSKRIDVISRIFFP 424


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 420 WPSEXLLQQHYIDLASRPFFP 358
           W S+   +   ID+ SR FFP
Sbjct: 404 WLSKFPTRSKRIDVISRIFFP 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,448
Number of Sequences: 438
Number of extensions: 2210
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)