Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0480.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1) ... 101 3e-22
At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3, mitoch... 100 1e-21
At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4) ... 99 2e-21
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor... 97 8e-21
At1g17410.1 68414.m02126 nucleoside diphosphate kinase family pr... 40 7e-04
At5g20370.1 68418.m02423 serine-rich protein-related contains so... 28 4.0
At2g38390.1 68415.m04716 peroxidase, putative similar to peroxid... 27 9.3
At2g38380.1 68415.m04715 peroxidase 22 (PER22) (P22) (PRXEA) / b... 27 9.3
>At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1)
identical to identical to Nucleoside diphosphate kinase
I (NDK I) (NDP kinase I) (NDPK I) (SP:P39207)
[Arabidopsis thaliana]; contains Pfam PF00334 :
Nucleoside diphosphate kinase domain;
Length = 169
Score = 101 bits (242), Expect = 3e-22
Identities = 45/85 (52%), Positives = 58/85 (68%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGL+G +I RFEKKGF L GLK + ++HY DL+S+ FF GLV Y+ S P V M
Sbjct: 34 QRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAM 93
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
+WEG N V TGR+++GA+NP P
Sbjct: 94 IWEGKNVVLTGRKIIGATNPAASEP 118
Score = 70.5 bits (165), Expect = 6e-13
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVYE 89
P+ +PGTI GD I +GR +IHGSDSVESA+KEI LW D V W + WVYE
Sbjct: 113 PAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGP-VNWQSSVHPWVYE 168
>At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3,
mitochondrial (NDK3) identical to Nucleoside diphosphate
kinase III, mitochondrial precursor (NDK III) (NDP
kinase III) (NDPK III) (SP:O49203) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain;
Length = 238
Score = 99.5 bits (237), Expect = 1e-21
Identities = 43/85 (50%), Positives = 59/85 (69%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGL+ II RFE+KGF LVG+K + PS+ Q+HY DL RPFF GL ++SS P + M
Sbjct: 101 QRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAM 160
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
VWEG ++ GR+++GA++P P
Sbjct: 161 VWEGDGVIRYGRKLIGATDPQKSEP 185
Score = 69.7 bits (163), Expect = 1e-12
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVY 92
P +PGTI GDL + VGR IIHGSD E+AK EI LW +E+V +T +E W+Y
Sbjct: 180 PQKSEPGTIRGDLAVTVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235
>At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4)
contains Pfam PF00334 : Nucleoside diphosphate kinase
domain; identical to nucleoside diphosphate kinase 4
(GI:11990430) [Arabidopsis thaliana]
Length = 237
Score = 98.7 bits (235), Expect = 2e-21
Identities = 43/85 (50%), Positives = 59/85 (69%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGL+ II RFE+KG+ LVG+K + PS+ Q+HY DL RPFF GL ++SS P V M
Sbjct: 100 QRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAM 159
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
VWEG ++ GR+++GA++P P
Sbjct: 160 VWEGEGVIRYGRKLIGATDPQKSEP 184
Score = 69.3 bits (162), Expect = 1e-12
Identities = 30/56 (53%), Positives = 37/56 (66%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVY 92
P +PGTI GDL + VGR IIHGSD E+AK EI LW +E+V +T E W+Y
Sbjct: 179 PQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIY 234
>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
chloroplast (NDPK2) identical to SP|O64903 Nucleoside
diphosphate kinase II, chloroplast precursor (NDK II)
(NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain; contains Pfam profile
PF00334: Nucleoside diphosphate kinase
Length = 231
Score = 96.7 bits (230), Expect = 8e-21
Identities = 41/85 (48%), Positives = 60/85 (70%)
Frame = -2
Query: 495 QRGLVGTIIXRFEKKGFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXM 316
QRGLVG II RFEKKGF L+GLK + L ++HY DL+++ FFP L++Y++S P V M
Sbjct: 96 QRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCM 155
Query: 315 VWEGLNXVKTGRQMLGASNPVTCSP 241
WEG+ V + R+++G ++P+ P
Sbjct: 156 AWEGVGVVASARKLIGKTDPLQAEP 180
Score = 66.5 bits (155), Expect = 9e-12
Identities = 28/57 (49%), Positives = 36/57 (63%)
Frame = -1
Query: 259 PSDLQPGTIXGDLCIXVGRXIIHGSDSVESAKKEIGLWXXDKEVVGWTPANEXWVYE 89
P +PGTI GDL + GR I+HGSDS E+ K+EIGLW + E+ W A W+ E
Sbjct: 175 PLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 231
>At1g17410.1 68414.m02126 nucleoside diphosphate kinase family
protein contains Pfam PF00334 : Nucleoside diphosphate
kinase domain; similar to Nucleoside diphosphate kinase
homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5)
(Testis-specific nm23 homolog) (Inhibitor of p53-induced
apoptosis-beta) (IPIA-beta) (SP:P56597) {Homo sapiens}
Length = 181
Score = 40.3 bits (90), Expect = 7e-04
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = -2
Query: 450 GFXLVGLKFVWPSEXLLQQHYIDLASRPFFPGLVKYMSSXPXVXMVWEGLNXVKTGRQML 271
GF +V + Y + +SR FFP LV YM+S P + MV E N V R ++
Sbjct: 60 GFNIVKEMLTQLDKETASAFYEEHSSRSFFPHLVTYMTSGPVLVMVLEKRNAVSDWRDLI 119
Query: 270 GASN 259
G ++
Sbjct: 120 GPTD 123
>At5g20370.1 68418.m02423 serine-rich protein-related contains some
similarity to serine-rich proteins
Length = 175
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 436 RFEIRMAIRXASPATLHRFGIPAFLPWSSKVHE 338
RF +A A P++LH P F P S+ HE
Sbjct: 140 RFRRSLAANLAKPSSLHSHRRPEFRPRLSRFHE 172
>At2g38390.1 68415.m04716 peroxidase, putative similar to peroxidase
isozyme [Armoracia rusticana] gi|217934|dbj|BAA14144;
identical to cDNA class III peroxidase ATP34,
GI:17530563
Length = 349
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 107 ICRCPAHNFFVRXPEAYFLFSRFNAVRTMDDXTPNXNA 220
+ R H+ FVR +A L + RT D PN N+
Sbjct: 65 LLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNKNS 102
>At2g38380.1 68415.m04715 peroxidase 22 (PER22) (P22) (PRXEA) /
basic peroxidase E identical to SP|P24102 Peroxidase 22
precursor (EC 1.11.1.7) (Atperox P22) (ATPEa) (Basic
peroxidase E) {Arabidopsis thaliana}; identical to cDNA
class III peroxidase ATPEa, GI:17530569
Length = 349
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 107 ICRCPAHNFFVRXPEAYFLFSRFNAVRTMDDXTPNXNA 220
+ R H+ FVR +A L + RT D PN N+
Sbjct: 65 LLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNANS 102
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,434,124
Number of Sequences: 28952
Number of extensions: 169064
Number of successful extensions: 310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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