Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0479.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.76 
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.1  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    25   9.4  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    25   9.4  

>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 172 IFAFPYPERLTVHKTXIMGLNNVLHYENNTFNW 270
           I AF Y ++ T + + IMG+   L+   N +NW
Sbjct: 59  ISAFQYMDKSTSNYSSIMGIRTDLNMVGNQYNW 91


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 444 NPVYFCCXTFVLTRQGRSCDFGAKTNSLSSADTSHGLLTCDIW 316
           N V  C   +VLT Q R C     T+ L S      +  C+IW
Sbjct: 387 NVVQSCIGRWVLTNQLRKCGIIGATHPLRSVIPLDNIF-CNIW 428


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 331 YLRHLAEGRGANVSCFISAMAN*MYCSRNVVHYLNP*SR 215
           YL  LA+ + ++V+ F+S +    Y   NV+H  +  SR
Sbjct: 6   YLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSR 44


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 331 YLRHLAEGRGANVSCFISAMAN*MYCSRNVVHYLNP*SR 215
           YL  LA+ + ++V+ F+S +    Y   NV+H  +  SR
Sbjct: 6   YLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSR 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,532
Number of Sequences: 5004
Number of extensions: 53008
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)