Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0479.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146     28   5.6  
12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144     28   7.4  

>11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146
          Length = 163

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 71  GLDCLIN*ITRPHSKDHIRPRYNNHTEVRNYHLQFLRSHTPNVLP 205
           GLD   N      S D  RP + + ++  N+ LQ +   TP  LP
Sbjct: 111 GLDAATNCARAVPSFDRDRPNFLSTSKKHNHELQLINWSTPPALP 155


>12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144
          Length = 300

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 351 DTS-HGLLTCDIWLKGGGPMYHVL 283
           DTS +G+L C    KGG PMYH++
Sbjct: 220 DTSANGMLVCTTIDKGGLPMYHLV 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,138,573
Number of Sequences: 37544
Number of extensions: 308514
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)