Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0479.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21623| Best HMM Match : AAA_5 (HMM E-Value=0.18)                    31   1.1  
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)               29   2.5  
SB_11828| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_31529| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  

>SB_21623| Best HMM Match : AAA_5 (HMM E-Value=0.18)
          Length = 260

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -2

Query: 398 DDRVILAPKQIRYPVRILH-TACLLAT 321
           D++ IL P Q+R+ +RIL+ T C++AT
Sbjct: 229 DNKYILLPHQVRHALRILYVTQCIIAT 255


>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
          Length = 907

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +3

Query: 144 TQKFGIIIC-NFCVPIPRTSYRTQNRDYGFK*CTTLREQYI*LAMAEIKHDTLAPLPSAR 320
           T  F +  C N   P+ RT Y T +  + +    T R  +       I+HD +   P  R
Sbjct: 127 TLVFNLETCINNITPVVRTQYNTTSTSHPWYVLNTTRHPHHTRGTYSIQHD-IHITPVVR 185

Query: 321 CRK*ASRVKYPHWITNLFWRQNHT 392
            R   +   +P ++ +   +Q+HT
Sbjct: 186 PRYNTTSTSHPWYVLDTTQQQHHT 209


>SB_11828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +3

Query: 144 TQKFGIIICNFCVPIPRTSYRTQNRDYGFK*CTTLREQYI*L--AMAEIKHDTLAPLPSA 317
           T+K G ++  FC P   +  R+  R+Y    C ++ ++YI     +A+ KH      P A
Sbjct: 189 TKKLGSVMTTFCFPAENSVKRSPEREY----CISIYDEYIVTPNTLADRKHSC---YPRA 241

Query: 318 RCRK*ASRVKYPHWITN 368
           R R      K+ +W  N
Sbjct: 242 RKR---GSGKFIYWRKN 255


>SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 129 LVIIITQKFGIIICNFCVPIPRTSYRTQN 215
           LV  +  +F + I  FC+ IPR+SY   N
Sbjct: 108 LVRYLRDRFAVKIVGFCLVIPRSSYSVFN 136


>SB_31529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 129 LVIIITQKFGIIICNFCVPIPRTSYRTQN 215
           LV  +  +F + I  FC+ IPR+SY   N
Sbjct: 61  LVRYLRDRFAVKIVGFCLVIPRSSYSVFN 89


>SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 375 KTNSLSSADTSHGLLTCDIWLKGGGPMYHVLFQ 277
           K N+LSSAD S  L TC+        MY VL +
Sbjct: 400 KENNLSSADLSELLRTCEFQSDSWQRMYRVLIK 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,100
Number of Sequences: 59808
Number of extensions: 399648
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)